-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_1237

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 74, 135
Couldn't classify 2420, 2653
Sorry, prediction snap_scaffold_1237-snap.2-T1 fails validation.
(GGC)	 AG	74-135	GT	CGG
(AGC)	 AG	168-286	GT	GGG
(AAG)	 AG	2420-2653	GT	CGG
-recovered snap_scaffold_1237-snap.2-T1, internal, 74, 135
-recovered snap_scaffold_1237-snap.2-T1, internal, 168, 286
-recovered snap_scaffold_1237-snap.2-T1, internal, 2420, 2653

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_61038-T1
Couldn't classify 2631, 2833
Sorry, prediction Augustus_model.g40411.t1 fails validation.
(ATG)	 GC	314-561	GT	CAG
(TCT)	 AG	2631-2833	GT	GCG
-recovered Augustus_model.g40411.t1, initial, 314, 561
-recovered Augustus_model.g40411.t1, internal, 2631, 2833
Couldn't classify 2627, 2833
Sorry, prediction snap_scaffold_1237-snap.1-T1 fails validation.
(ATG)	 TA	565-628	GT	GAG
(CCA)	 AG	2627-2833	GT	GCG
-recovered snap_scaffold_1237-snap.1-T1, initial, 565, 628
-recovered snap_scaffold_1237-snap.1-T1, internal, 2627, 2833

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 2331, rend_intergenic: 74  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 2895
-exon list size: 11


building trellis

7.7    
15.4    
23.1    
30.8    
38.5    
46.2    
53.8    
61.5    
69.2    
76.9    
84.6    
92.3    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 2331, rend_intergenic: 74  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support