-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_1232

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 1073, 1131
Sorry, prediction Augustus_model.g40409.t1 fails validation.
(ACC)	 AG	1073-1131	GT	AGG
(ATG)	 AG	1450-1569	GT	CGG
(CTT)	 AG	2425-2559	CT	AGC
-recovered Augustus_model.g40409.t1, initial, 1450, 1569
-recovered Augustus_model.g40409.t1, terminal, 2425, 2559
-recovered Augustus_model.g40409.t1, internal, 1073, 1131
-recovered Augustus_model.g40409.t1, internal, 1450, 1569
Couldn't classify 2425, 2529
Sorry, prediction GlimmerHMM_glimmerT_61034-T1 fails validation.
(ATG)	 TC	1312-1569	GT	CGG
(CTT)	 AG	2425-2529	GT	TGG
-recovered GlimmerHMM_glimmerT_61034-T1, initial, 1312, 1569
-recovered GlimmerHMM_glimmerT_61034-T1, internal, 2425, 2529
Couldn't classify 1073, 1131
Couldn't classify 2425, 2529
Sorry, prediction snap_scaffold_1232-snap.2-T1 fails validation.
(ACC)	 AG	1073-1131	GT	AGG
(ATG)	 AG	1378-1569	GT	CGG
(CTT)	 AG	2425-2529	GT	TGG
-recovered snap_scaffold_1232-snap.2-T1, initial, 1378, 1569
-recovered snap_scaffold_1232-snap.2-T1, internal, 1073, 1131
-recovered snap_scaffold_1232-snap.2-T1, internal, 1378, 1569
-recovered snap_scaffold_1232-snap.2-T1, internal, 2425, 2529

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 606, 749
Couldn't classify 2662, 2802
Sorry, prediction snap_scaffold_1232-snap.1-T1 fails validation.
(CAA)	 AG	606-749	GT	AGG
(CCT)	 AG	787-927	GT	AGG
(GTG)	 AG	1295-1585	GT	TGG
(CTA)	 AG	2662-2802	GT	CAG
-recovered snap_scaffold_1232-snap.1-T1, internal, 606, 749
-recovered snap_scaffold_1232-snap.1-T1, internal, 787, 927
-recovered snap_scaffold_1232-snap.1-T1, internal, 1295, 1585
-recovered snap_scaffold_1232-snap.1-T1, internal, 2662, 2802

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 2302, rend_intergenic: 1073  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 2907
-exon list size: 18


building trellis

5.0    
10.0    
15.0    
20.0    
25.0    
30.0    
35.0    
40.0    
45.0    
50.0    
55.0    
60.0    
65.0    
70.0    
75.0    
80.0    
85.0    
90.0    
95.0    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 2302, rend_intergenic: 1073  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support