-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_123

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_59839-T1
Valid prediction for GlimmerHMM_glimmerT_59840-T1
Couldn't classify 14151, 14230
Sorry, prediction snap_scaffold_123-snap.2-T1 fails validation.
(ATG)	 GC	5883-5975	GT	AGG
(ATC)	 AG	8579-8662	GT	TGG
(AGC)	 AG	10827-10964	GT	AGG
(GTT)	 AG	14151-14230	GT	TGG
-recovered snap_scaffold_123-snap.2-T1, initial, 5883, 5975
-recovered snap_scaffold_123-snap.2-T1, internal, 8579, 8662
-recovered snap_scaffold_123-snap.2-T1, internal, 10827, 10964
-recovered snap_scaffold_123-snap.2-T1, internal, 14151, 14230

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_59842-T1
Valid prediction for GlimmerHMM_glimmerT_59841-T1
Couldn't classify 3471, 3528
Sorry, prediction pasa_asmbl_9269.p1 fails validation.
(CTT)	 GC	3471-3528	GT	CGG
(GGA)	 AG	3653-3703	GT	AGG
(AGG)	 AG	4108-4192	GT	AAG
(GTT)	 AG	5686-5812	GT	AGG
(TAC)	 AG	6347-6436	CC	GAC
-recovered pasa_asmbl_9269.p1, terminal, 6347, 6436
-recovered pasa_asmbl_9269.p1, internal, 3653, 3703
-recovered pasa_asmbl_9269.p1, internal, 4108, 4192
-recovered pasa_asmbl_9269.p1, internal, 5686, 5812
Couldn't classify 7402, 7713
Sorry, prediction pasa_asmbl_9268.p1 fails validation.
(ACT)	 AC	7402-7713	TG	CAT
Valid prediction for HiQ_model.g39643.t1
Valid prediction for snap_scaffold_123-snap.1-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 10871, rend_intergenic: 5883  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 14344
-exon list size: 21


building trellis

4.3    
8.7    
13.0    
17.4    
21.7    
26.1    
30.4    
34.8    
39.1    
43.5    
47.8    
52.2    
56.5    
60.9    
65.2    
69.6    
73.9    
78.3    
82.6    
87.0    
91.3    
95.7    
-found 3 predictions from path traversal
Error with prediction: snap lend_intergenic: 10871, rend_intergenic: 5883  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support