-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_1227

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 35, 93
Sorry, prediction snap_scaffold_1227-snap.1-T1 fails validation.
(GGT)	 AG	35-93	GT	AGG
(GCA)	 AG	2238-2296	GT	GGG
(TAG)	 AG	2436-2503	GT	GGG
(GAA)	 AG	2765-2838	TT	AAT
-recovered snap_scaffold_1227-snap.1-T1, terminal, 2765, 2838
-recovered snap_scaffold_1227-snap.1-T1, internal, 35, 93
-recovered snap_scaffold_1227-snap.1-T1, internal, 2238, 2296
-recovered snap_scaffold_1227-snap.1-T1, internal, 2436, 2503

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 2828, 2886
Sorry, prediction snap_scaffold_1227-snap.2-T1 fails validation.
(ATG)	 AC	292-398	GT	AGG
(TAT)	 AG	928-991	GT	GGG
(GGG)	 AG	1352-1412	GT	GGG
(CTG)	 AG	2828-2886	GT	GGG
-recovered snap_scaffold_1227-snap.2-T1, initial, 292, 398
-recovered snap_scaffold_1227-snap.2-T1, internal, 928, 991
-recovered snap_scaffold_1227-snap.2-T1, internal, 1352, 1412
-recovered snap_scaffold_1227-snap.2-T1, internal, 2828, 2886

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 2838, rend_intergenic: 40  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 2925
-exon list size: 13


building trellis

6.7    
13.3    
20.0    
26.7    
33.3    
40.0    
46.7    
53.3    
60.0    
66.7    
73.3    
80.0    
86.7    
93.3    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 2838, rend_intergenic: 40  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support