-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_1225

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 492, 633
Sorry, prediction snap_scaffold_1225-snap.2-T1 fails validation.
(AGC)	 AG	492-633	GT	ACG
(GCT)	 AG	2135-2227	TG	AGT
-recovered snap_scaffold_1225-snap.2-T1, terminal, 2135, 2227
-recovered snap_scaffold_1225-snap.2-T1, internal, 492, 633

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 698, 829
Sorry, prediction GlimmerHMM_glimmerT_61031-T1 fails validation.
(CCT)	 AG	698-829	GT	CCG
(CAC)	 AG	2333-2500	GT	TGG
(GAG)	 AG	2737-2765	GG	GAG
-recovered GlimmerHMM_glimmerT_61031-T1, terminal, 2737, 2765
-recovered GlimmerHMM_glimmerT_61031-T1, internal, 698, 829
-recovered GlimmerHMM_glimmerT_61031-T1, internal, 2333, 2500
Couldn't classify 689, 829
Couldn't classify 2737, 2844
Sorry, prediction pasa_asmbl_9266.p1 fails validation.
(TGT)	 TG	689-829	GT	CCG
(GAG)	 AG	1345-1420	GT	AGG
(CAC)	 AG	2333-2547	GT	AGG
(GAG)	 AG	2737-2844	AT	CTA
-recovered pasa_asmbl_9266.p1, internal, 1345, 1420
-recovered pasa_asmbl_9266.p1, internal, 2333, 2547
Couldn't classify 71, 149
Couldn't classify 2737, 2881
Sorry, prediction snap_scaffold_1225-snap.1-T1 fails validation.
(GTA)	 AG	71-149	GT	AGG
(CTT)	 AG	710-829	GT	CCG
(GAG)	 AG	1345-1420	GT	AGG
(CAC)	 AG	2333-2547	GT	AGG
(GAG)	 AG	2737-2881	GT	ATG
-recovered snap_scaffold_1225-snap.1-T1, internal, 71, 149
-recovered snap_scaffold_1225-snap.1-T1, internal, 710, 829
-recovered snap_scaffold_1225-snap.1-T1, internal, 1345, 1420
-recovered snap_scaffold_1225-snap.1-T1, internal, 2333, 2547
-recovered snap_scaffold_1225-snap.1-T1, internal, 2737, 2881
Couldn't classify 2737, 2846
Sorry, prediction Augustus_model.g40407.t1 fails validation.
(ATG)	 TA	48-149	GT	AGG
(CCT)	 AG	698-829	GT	CCG
(GAG)	 AG	1345-1420	GT	AGG
(CAC)	 AG	2333-2547	GT	AGG
(GAG)	 AG	2737-2846	GT	ATG
-recovered Augustus_model.g40407.t1, initial, 48, 149
-recovered Augustus_model.g40407.t1, internal, 698, 829
-recovered Augustus_model.g40407.t1, internal, 1345, 1420
-recovered Augustus_model.g40407.t1, internal, 2333, 2547
-recovered Augustus_model.g40407.t1, internal, 2737, 2846

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 2860, rend_intergenic: 492  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 2930
-exon list size: 16


building trellis

5.6    
11.1    
16.7    
22.2    
27.8    
33.3    
38.9    
44.4    
50.0    
55.6    
61.1    
66.7    
72.2    
77.8    
83.3    
88.9    
94.4    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 2860, rend_intergenic: 492  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support