-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_121

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_121-snap.1-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_121-snap.3-T1
add_exon() Sorry, snap_scaffold_121-snap.3-T1 5112-5848-terminal-1 is invalid.
Valid prediction for GlimmerHMM_glimmerT_59834-T1
Valid prediction for GlimmerHMM_glimmerT_59835-T1
Couldn't classify 10338, 10617
Sorry, prediction snap_scaffold_121-snap.2-T1 fails validation.
(ATG)	 GG	5900-6170	GT	AGG
(TTC)	 AG	6233-6300	GT	AAG
(GGA)	 AG	9196-9286	GT	TGG
(GTT)	 AG	10338-10617	GT	TAG
-recovered snap_scaffold_121-snap.2-T1, initial, 5900, 6170
-recovered snap_scaffold_121-snap.2-T1, internal, 6233, 6300
-recovered snap_scaffold_121-snap.2-T1, internal, 9196, 9286
-recovered snap_scaffold_121-snap.2-T1, internal, 10338, 10617
Valid prediction for GlimmerHMM_glimmerT_59836-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 14179, rend_intergenic: 3773  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 14389
-exon list size: 15


building trellis

5.9    
11.8    
17.6    
23.5    
29.4    
35.3    
41.2    
47.1    
52.9    
58.8    
64.7    
70.6    
76.5    
82.4    
88.2    
94.1    
-found 3 predictions from path traversal
Error with prediction: snap lend_intergenic: 14179, rend_intergenic: 3773  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support