-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_1209

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 90, 318
Sorry, prediction GlimmerHMM_glimmerT_61026-T1 fails validation.
(TCG)	 AG	90-318	GT	TTG
(CCC)	 AG	1920-1999	GT	GAG
-recovered GlimmerHMM_glimmerT_61026-T1, terminal, 1920, 1999
-recovered GlimmerHMM_glimmerT_61026-T1, internal, 90, 318
-recovered GlimmerHMM_glimmerT_61026-T1, internal, 1920, 1999
Couldn't classify 2614, 2686
Sorry, prediction snap_scaffold_1209-snap.1-T1 fails validation.
(ATG)	 GT	1256-1322	GT	TGG
(CCC)	 AG	1920-1995	GT	AGG
(TTT)	 AG	2614-2686	GT	GGG
-recovered snap_scaffold_1209-snap.1-T1, initial, 1256, 1322
-recovered snap_scaffold_1209-snap.1-T1, internal, 1920, 1995
-recovered snap_scaffold_1209-snap.1-T1, internal, 2614, 2686
Couldn't classify 211, 318
Sorry, prediction Augustus_model.g40405.t1 fails validation.
(ACT)	 AG	211-318	GT	TTG
(CCC)	 AG	1920-1995	GT	AGG
(TTT)	 AG	2367-2532	AT	AAA
-recovered Augustus_model.g40405.t1, terminal, 2367, 2532
-recovered Augustus_model.g40405.t1, internal, 211, 318
-recovered Augustus_model.g40405.t1, internal, 1920, 1995

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2973
-exon list size: 13


building trellis

6.7    
13.3    
20.0    
26.7    
33.3    
40.0    
46.7    
53.3    
60.0    
66.7    
73.3    
80.0    
86.7    
93.3    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support