-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_1205

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 1755, 1924
Couldn't classify 2839, 2869
Sorry, prediction pasa_asmbl_9260.p1 fails validation.
(GAG)	 CA	1755-1924	GT	CGG
(GTT)	 AG	2509-2697	GT	AGG
(CTG)	 AG	2839-2869	GT	CTG
-recovered pasa_asmbl_9260.p1, internal, 2509, 2697
-recovered pasa_asmbl_9260.p1, internal, 2839, 2869
Couldn't classify 30, 122
Couldn't classify 2839, 2908
Sorry, prediction snap_scaffold_1205-snap.1-T1 fails validation.
(GTG)	 AG	30-122	GT	CTG
(ATC)	 AG	580-703	GT	AGG
(ACA)	 AG	1257-1353	GT	AAG
(GAT)	 AG	1448-1581	GT	AGG
(AGG)	 AG	1756-1924	GT	CGG
(GTT)	 AG	2509-2763	GT	GTG
(CTG)	 AG	2839-2908	GT	GGG
-recovered snap_scaffold_1205-snap.1-T1, terminal, 580, 703
-recovered snap_scaffold_1205-snap.1-T1, internal, 30, 122
-recovered snap_scaffold_1205-snap.1-T1, internal, 580, 703
-recovered snap_scaffold_1205-snap.1-T1, internal, 1257, 1353
-recovered snap_scaffold_1205-snap.1-T1, internal, 1448, 1581
-recovered snap_scaffold_1205-snap.1-T1, internal, 1756, 1924
-recovered snap_scaffold_1205-snap.1-T1, internal, 2509, 2763
-recovered snap_scaffold_1205-snap.1-T1, internal, 2839, 2908
Couldn't classify 580, 703
Sorry, prediction GlimmerHMM_glimmerT_61025-T1 fails validation.
(ATC)	 AG	580-703	GT	AGG
(ACA)	 AG	1257-1353	GT	AAG
(GAT)	 AG	1448-1581	GT	AGG
(AGG)	 AG	1756-1924	GT	CGG
(GTT)	 AG	2509-2767	TA	GAT
-recovered GlimmerHMM_glimmerT_61025-T1, terminal, 580, 703
-recovered GlimmerHMM_glimmerT_61025-T1, terminal, 2509, 2767
-recovered GlimmerHMM_glimmerT_61025-T1, internal, 580, 703
-recovered GlimmerHMM_glimmerT_61025-T1, internal, 1257, 1353
-recovered GlimmerHMM_glimmerT_61025-T1, internal, 1448, 1581
-recovered GlimmerHMM_glimmerT_61025-T1, internal, 1756, 1924
Couldn't classify 1, 122
Couldn't classify 2839, 2908
Sorry, prediction Augustus_model.g40404.t1 fails validation.
(CTC)	 TC	1-122	GT	CTG
(ATC)	 AG	580-748	GT	AAG
(ACA)	 AG	1257-1353	GT	AAG
(GAT)	 AG	1448-1581	GT	AGG
(AGG)	 AG	1756-1924	GT	CGG
(GTT)	 AG	2509-2697	GT	AGG
(CTG)	 AG	2839-2908	GT	GGG
-recovered Augustus_model.g40404.t1, internal, 580, 748
-recovered Augustus_model.g40404.t1, internal, 1257, 1353
-recovered Augustus_model.g40404.t1, internal, 1448, 1581
-recovered Augustus_model.g40404.t1, internal, 1756, 1924
-recovered Augustus_model.g40404.t1, internal, 2509, 2697
-recovered Augustus_model.g40404.t1, internal, 2839, 2908

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2984
-exon list size: 18


building trellis

5.0    
10.0    
15.0    
20.0    
25.0    
30.0    
35.0    
40.0    
45.0    
50.0    
55.0    
60.0    
65.0    
70.0    
75.0    
80.0    
85.0    
90.0    
95.0    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support