-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_1204

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 2761, 2886
Sorry, prediction GlimmerHMM_glimmerT_61024-T1 fails validation.
(ATG)	 GC	2501-2578	GT	AGG
(CTG)	 AG	2761-2886	GT	ACG
-recovered GlimmerHMM_glimmerT_61024-T1, initial, 2501, 2578
-recovered GlimmerHMM_glimmerT_61024-T1, internal, 2761, 2886
Couldn't classify 1122, 1180
Couldn't classify 2761, 2886
Sorry, prediction snap_scaffold_1204-snap.2-T1 fails validation.
(GAT)	 AG	1122-1180	GT	AGG
(TTT)	 AG	1808-1880	GT	AGG
(GGC)	 AG	2450-2578	GT	AGG
(CTG)	 AG	2761-2886	GT	ACG
-recovered snap_scaffold_1204-snap.2-T1, internal, 1122, 1180
-recovered snap_scaffold_1204-snap.2-T1, internal, 1808, 1880
-recovered snap_scaffold_1204-snap.2-T1, internal, 2450, 2578
-recovered snap_scaffold_1204-snap.2-T1, internal, 2761, 2886
Couldn't classify 1125, 1180
Couldn't classify 2761, 2886
Sorry, prediction pasa_asmbl_9259.p1 fails validation.
(GCC)	 AT	1125-1180	GT	AGG
(TTT)	 AG	1808-1880	GT	AGG
(GGC)	 AG	2450-2578	GT	AGG
(CTG)	 AG	2761-2886	GT	ACG
-recovered pasa_asmbl_9259.p1, internal, 1808, 1880
-recovered pasa_asmbl_9259.p1, internal, 2450, 2578
-recovered pasa_asmbl_9259.p1, internal, 2761, 2886
Couldn't classify 1122, 1180
Couldn't classify 2761, 2886
Sorry, prediction Augustus_model.g40403.t1 fails validation.
(GAT)	 AG	1122-1180	GT	AGG
(TTT)	 AG	1808-1880	GT	AGG
(GGC)	 AG	2450-2578	GT	AGG
(CTG)	 AG	2761-2886	GT	ACG
-recovered Augustus_model.g40403.t1, internal, 1122, 1180
-recovered Augustus_model.g40403.t1, internal, 1808, 1880
-recovered Augustus_model.g40403.t1, internal, 2450, 2578
-recovered Augustus_model.g40403.t1, internal, 2761, 2886

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_1204-snap.1-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2987
-exon list size: 7


building trellis

11.1    
22.2    
33.3    
44.4    
55.6    
66.7    
77.8    
88.9    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support