-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_12/scaffold_12_930012-1072233 -reading genomic sequence. ** Processing features (+) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: +) -loading gene prediction evidence. (strand: +)Valid prediction for Augustus_model.g19032.t1 Valid prediction for snap_scaffold_12-snap.252-T1 Valid prediction for GlimmerHMM_glimmerT_28800-T1 Valid prediction for snap_scaffold_12-snap.218-T1 Valid prediction for snap_scaffold_12-snap.225-T1 Valid prediction for snap_scaffold_12-snap.229-T1 Valid prediction for GlimmerHMM_glimmerT_28789-T1 Valid prediction for GlimmerHMM_glimmerT_28782-T1 Valid prediction for snap_scaffold_12-snap.237-T1 Valid prediction for snap_scaffold_12-snap.254-T1 Valid prediction for Augustus_model.g19026.t1 Valid prediction for GlimmerHMM_glimmerT_28791-T1 Valid prediction for Augustus_model.g19028.t1 Valid prediction for GlimmerHMM_glimmerT_28779-T1 Valid prediction for snap_scaffold_12-snap.241-T1 Valid prediction for Augustus_model.g19027.t1 Valid prediction for GlimmerHMM_glimmerT_28798-T1 Valid prediction for Augustus_model.g19031.t1 Valid prediction for GlimmerHMM_glimmerT_28801-T1 Valid prediction for GlimmerHMM_glimmerT_28790-T1 Valid prediction for snap_scaffold_12-snap.242-T1 Valid prediction for GlimmerHMM_glimmerT_28780-T1 Couldn't classify 122094, 122210 Couldn't classify 123905, 124111 Sorry, prediction pasa_asmbl_8207.p1 fails validation. (GTG) AC 122094-122210 GT AGG (AAG) AG 122415-122513 GT TGG (GTG) AG 123547-123615 GT AGG (GCT) AG 123905-124111 CT GGC -recovered pasa_asmbl_8207.p1, internal, 122415, 122513 -recovered pasa_asmbl_8207.p1, internal, 123547, 123615 Couldn't classify 125037, 125088 Sorry, prediction pasa_asmbl_7455.p1 fails validation. (GAA) CA 125037-125088 GT AGG (GGG) AG 126743-126799 GT GGG (AGG) AG 126983-127080 GT AGG (GAG) AG 127435-128067 GA GAG -recovered pasa_asmbl_7455.p1, terminal, 127435, 128067 -recovered pasa_asmbl_7455.p1, internal, 126743, 126799 -recovered pasa_asmbl_7455.p1, internal, 126983, 127080 Valid prediction for snap_scaffold_12-snap.240-T1 Valid prediction for snap_scaffold_12-snap.243-T1 Valid prediction for GlimmerHMM_glimmerT_28794-T1 Couldn't classify 117640, 117744 Couldn't classify 120289, 120476 Sorry, prediction pasa_asmbl_7452.p1 fails validation. (GGG) CA 117640-117744 GT CTG (ACC) AG 117962-118112 GT AGG (GAG) AG 120289-120476 CG GCC -recovered pasa_asmbl_7452.p1, internal, 117962, 118112 Valid prediction for snap_scaffold_12-snap.221-T1 Valid prediction for GlimmerHMM_glimmerT_28795-T1 Valid prediction for snap_scaffold_12-snap.220-T1 Valid prediction for snap_scaffold_12-snap.248-T1 Valid prediction for snap_scaffold_12-snap.228-T1 Valid prediction for snap_scaffold_12-snap.222-T1 Valid prediction for Augustus_model.g19021.t1 Valid prediction for Augustus_model.g19029.t1 Valid prediction for snap_scaffold_12-snap.224-T1 Valid prediction for GlimmerHMM_glimmerT_28784-T1 Valid prediction for snap_scaffold_12-snap.231-T1 Valid prediction for snap_scaffold_12-snap.233-T1 Valid prediction for GlimmerHMM_glimmerT_28797-T1 Valid prediction for Augustus_model.g19030.t1 Couldn't classify 100146, 100232 Sorry, prediction pasa_asmbl_7450.p1 fails validation. (CAC) TC 100146-100232 GT TGG (CCC) AG 101103-101310 GT CAG (AAG) AG 103487-103580 GT CGG (GCT) AG 104079-104097 AG GAA -recovered pasa_asmbl_7450.p1, terminal, 104079, 104097 -recovered pasa_asmbl_7450.p1, internal, 101103, 101310 -recovered pasa_asmbl_7450.p1, internal, 103487, 103580 Valid prediction for snap_scaffold_12-snap.236-T1 Valid prediction for GlimmerHMM_glimmerT_28802-T1 -loading the search evidence (protein and EST search results, strand: +) -scoring exons (strand: +) ** Processing features (-) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: -) -loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_12-snap.227-T1 Valid prediction for CodingQuarry_transcript_10120-T1 Valid prediction for CodingQuarry_transcript_10122-T1 Valid prediction for GlimmerHMM_glimmerT_28786-T1 Couldn't classify 6478, 6579 Sorry, prediction pasa_asmbl_8288.p1 fails validation. (ATG) CC 4081-4249 GT GGG (ACG) AG 5559-5654 GT AGG (AGA) AG 6009-6325 GT AGG (TGG) AG 6478-6579 GC AGG -recovered pasa_asmbl_8288.p1, initial, 4081, 4249 -recovered pasa_asmbl_8288.p1, internal, 5559, 5654 -recovered pasa_asmbl_8288.p1, internal, 6009, 6325 -recovered pasa_asmbl_8288.p1, internal, 6478, 6579 Valid prediction for Augustus_model.g19033.t1 Valid prediction for GlimmerHMM_glimmerT_28792-T1 Valid prediction for GlimmerHMM_glimmerT_28788-T1 Valid prediction for snap_scaffold_12-snap.245-T1 Valid prediction for snap_scaffold_12-snap.250-T1 Valid prediction for GlimmerHMM_glimmerT_28781-T1 Valid prediction for pasa_asmbl_8281.p1 Valid prediction for GlimmerHMM_glimmerT_28783-T1 Valid prediction for GlimmerHMM_glimmerT_28793-T1 Valid prediction for GlimmerHMM_glimmerT_28778-T1 Valid prediction for snap_scaffold_12-snap.238-T1 Valid prediction for snap_scaffold_12-snap.246-T1 Valid prediction for snap_scaffold_12-snap.251-T1 Valid prediction for pasa_asmbl_8285.p1 Valid prediction for snap_scaffold_12-snap.247-T1 Valid prediction for GlimmerHMM_glimmerT_28787-T1 Valid prediction for GlimmerHMM_glimmerT_28803-T1 Valid prediction for snap_scaffold_12-snap.239-T1 Valid prediction for snap_scaffold_12-snap.249-T1 Valid prediction for HiQ_model.g19024.t1 Valid prediction for snap_scaffold_12-snap.219-T1 Valid prediction for GlimmerHMM_glimmerT_28777-T1 Valid prediction for Augustus_model.g19025.t1 Valid prediction for GlimmerHMM_glimmerT_28799-T1 Valid prediction for CodingQuarry_transcript_10121-T1 Valid prediction for snap_scaffold_12-snap.230-T1 Valid prediction for snap_scaffold_12-snap.232-T1 Valid prediction for snap_scaffold_12-snap.244-T1 Valid prediction for snap_scaffold_12-snap.223-T1 Valid prediction for snap_scaffold_12-snap.234-T1 Valid prediction for snap_scaffold_12-snap.253-T1 Valid prediction for GlimmerHMM_glimmerT_28785-T1 Valid prediction for snap_scaffold_12-snap.235-T1 Valid prediction for CodingQuarry_transcript_10125-T1 Valid prediction for GlimmerHMM_glimmerT_28796-T1 Valid prediction for snap_scaffold_12-snap.226-T1 Valid prediction for HiQ_model.g19023.t1 Valid prediction for Augustus_model.g19022.t1 -loading the search evidence (protein and EST search results, strand: -) -scoring exons (strand: -)Error with prediction: snap lend_intergenic: 10639, rend_intergenic: 6310 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 23555, rend_intergenic: 19816 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 28182, rend_intergenic: 24835 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 34688, rend_intergenic: 31646 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 39270, rend_intergenic: 35497 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 40952, rend_intergenic: 39279 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 43161, rend_intergenic: 41899 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 77924, rend_intergenic: 71898 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 105646, rend_intergenic: 93223 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 114658, rend_intergenic: 109906 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 128067, rend_intergenic: 114953 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 136650, rend_intergenic: 134273 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. -building DP trellis -building trellis in range 1 - 142222 -exon list size: 278 building trellis 0.4 0.7 1.1 1.4 1.8 2.1 2.5 2.9 3.2 3.6 3.9 4.3 4.6 5.0 5.4 5.7 6.1 6.4 6.8 7.1 7.5 7.9 8.2 8.6 8.9 9.3 9.6 10.0 10.4 10.7 11.1 11.4 11.8 12.1 12.5 12.9 13.2 13.6 13.9 14.3 14.6 15.0 15.4 15.7 16.1 16.4 16.8 17.1 17.5 17.9 18.2 18.6 18.9 19.3 19.6 20.0 20.4 20.7 21.1 21.4 21.8 22.1 22.5 22.9 23.2 23.6 23.9 24.3 24.6 25.0 25.4 25.7 26.1 26.4 26.8 27.1 27.5 27.9 28.2 28.6 28.9 29.3 29.6 30.0 30.4 30.7 31.1 31.4 31.8 32.1 32.5 32.9 33.2 33.6 33.9 34.3 34.6 35.0 35.4 35.7 36.1 36.4 36.8 37.1 37.5 37.9 38.2 38.6 38.9 39.3 39.6 40.0 40.4 40.7 41.1 41.4 41.8 42.1 42.5 42.9 43.2 43.6 43.9 44.3 44.6 45.0 45.4 45.7 46.1 46.4 46.8 47.1 47.5 47.9 48.2 48.6 48.9 49.3 49.6 50.0 50.4 50.7 51.1 51.4 51.8 52.1 52.5 52.9 53.2 53.6 53.9 54.3 54.6 55.0 55.4 55.7 56.1 56.4 56.8 57.1 57.5 57.9 58.2 58.6 58.9 59.3 59.6 60.0 60.4 60.7 61.1 61.4 61.8 62.1 62.5 62.9 63.2 63.6 63.9 64.3 64.6 65.0 65.4 65.7 66.1 66.4 66.8 67.1 67.5 67.9 68.2 68.6 68.9 69.3 69.6 70.0 70.4 70.7 71.1 71.4 71.8 72.1 72.5 72.9 73.2 73.6 73.9 74.3 74.6 75.0 75.4 75.7 76.1 76.4 76.8 77.1 77.5 77.9 78.2 78.6 78.9 79.3 79.6 80.0 80.4 80.7 81.1 81.4 81.8 82.1 82.5 82.9 83.2 83.6 83.9 84.3 84.6 85.0 85.4 85.7 86.1 86.4 86.8 87.1 87.5 87.9 88.2 88.6 88.9 89.3 89.6 90.0 90.4 90.7 91.1 91.4 91.8 92.1 92.5 92.9 93.2 93.6 93.9 94.3 94.6 95.0 95.4 95.7 96.1 96.4 96.8 97.1 97.5 97.9 98.2 98.6 98.9 99.3 99.6 -found 23 predictions from path traversal Error with prediction: snap lend_intergenic: 10639, rend_intergenic: 6310 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 23555, rend_intergenic: 19816 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 28182, rend_intergenic: 24835 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 34688, rend_intergenic: 31646 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 39270, rend_intergenic: 35497 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 40952, rend_intergenic: 39279 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 43161, rend_intergenic: 41899 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 77924, rend_intergenic: 71898 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 105646, rend_intergenic: 93223 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 114658, rend_intergenic: 109906 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 128067, rend_intergenic: 114953 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 136650, rend_intergenic: 134273 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. -reporting highest scoring path thru the trellis. -found 15 predictions persist after filtering for low support -building DP trellis -building trellis in range 1 - 10012 -exon list size: 12 building trellis 7.1 14.3 21.4 28.6 35.7 42.9 50.0 57.1 64.3 71.4 78.6 85.7 92.9 -found 1 predictions from path traversal -reporting highest scoring path thru the trellis. -found 0 predictions persist after filtering for low support