-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_12/scaffold_12_6010964-6255428

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_29434-T1
Valid prediction for Augustus_model.g19405.t1
Valid prediction for GlimmerHMM_glimmerT_29418-T1
Valid prediction for GlimmerHMM_glimmerT_29424-T1
Valid prediction for snap_scaffold_12-snap.1163-T1
Valid prediction for Augustus_model.g19411.t1
Valid prediction for snap_scaffold_12-snap.1173-T1
Valid prediction for snap_scaffold_12-snap.1160-T1
Valid prediction for GlimmerHMM_glimmerT_29428-T1
Valid prediction for snap_scaffold_12-snap.1153-T1
Valid prediction for snap_scaffold_12-snap.1161-T1
Valid prediction for snap_scaffold_12-snap.1168-T1
Couldn't classify 186129, 186155
Couldn't classify 189896, 190068
Sorry, prediction pasa_asmbl_7669.p1 fails validation.
(GAG)	 AC	186129-186155	GT	CTG
(GTG)	 AG	186833-186904	GT	AGG
(TTT)	 AG	187119-187267	GT	ATG
(GTG)	 AG	187659-187752	GT	TGG
(TCG)	 AG	187883-187999	GT	AGG
(AGT)	 AG	188150-188320	GT	AGG
(GAC)	 AG	188589-188667	GT	GGG
(GGA)	 AG	188890-189002	GT	AGG
(GGC)	 AG	189296-189382	GT	AGG
(GAA)	 AG	189492-189711	GT	AGG
(GCA)	 AG	189896-190068	GG	GGG
-recovered pasa_asmbl_7669.p1, internal, 186833, 186904
-recovered pasa_asmbl_7669.p1, internal, 187119, 187267
-recovered pasa_asmbl_7669.p1, internal, 187659, 187752
-recovered pasa_asmbl_7669.p1, internal, 187883, 187999
-recovered pasa_asmbl_7669.p1, internal, 188150, 188320
-recovered pasa_asmbl_7669.p1, internal, 188589, 188667
-recovered pasa_asmbl_7669.p1, internal, 188890, 189002
-recovered pasa_asmbl_7669.p1, internal, 189296, 189382
-recovered pasa_asmbl_7669.p1, internal, 189492, 189711
Valid prediction for Augustus_model.g19410.t1
Valid prediction for snap_scaffold_12-snap.1170-T1
Valid prediction for snap_scaffold_12-snap.1172-T1
Valid prediction for GlimmerHMM_glimmerT_29430-T1
Valid prediction for snap_scaffold_12-snap.1162-T1
Valid prediction for GlimmerHMM_glimmerT_29423-T1
Valid prediction for Augustus_model.g19407.t1
Valid prediction for snap_scaffold_12-snap.1158-T1
Valid prediction for GlimmerHMM_glimmerT_29429-T1
Valid prediction for snap_scaffold_12-snap.1166-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_12-snap.1155-T1
Valid prediction for GlimmerHMM_glimmerT_29431-T1
Valid prediction for snap_scaffold_12-snap.1165-T1
Valid prediction for GlimmerHMM_glimmerT_29426-T1
Valid prediction for Augustus_model.g19406.t1
Valid prediction for GlimmerHMM_glimmerT_29417-T1
Valid prediction for GlimmerHMM_glimmerT_29427-T1
Valid prediction for snap_scaffold_12-snap.1156-T1
Valid prediction for snap_scaffold_12-snap.1167-T1
Valid prediction for GlimmerHMM_glimmerT_29425-T1
Valid prediction for snap_scaffold_12-snap.1154-T1
Valid prediction for snap_scaffold_12-snap.1159-T1
Valid prediction for GlimmerHMM_glimmerT_29422-T1
Valid prediction for GlimmerHMM_glimmerT_29433-T1
Valid prediction for Augustus_model.g19408.t1
Valid prediction for GlimmerHMM_glimmerT_29420-T1
Valid prediction for snap_scaffold_12-snap.1171-T1
Valid prediction for Augustus_model.g19409.t1
Valid prediction for GlimmerHMM_glimmerT_29416-T1
Valid prediction for GlimmerHMM_glimmerT_29432-T1
Valid prediction for snap_scaffold_12-snap.1164-T1
Valid prediction for GlimmerHMM_glimmerT_29421-T1
Valid prediction for GlimmerHMM_glimmerT_29419-T1
Valid prediction for snap_scaffold_12-snap.1157-T1
Valid prediction for snap_scaffold_12-snap.1169-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 208770, rend_intergenic: 205087  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 214750, rend_intergenic: 211509  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 217236, rend_intergenic: 215189  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 224483, rend_intergenic: 217903  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 231818, rend_intergenic: 225253  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 244465
-exon list size: 168


building trellis

0.6    
1.2    
1.8    
2.4    
2.9    
3.5    
4.1    
4.7    
5.3    
5.9    
6.5    
7.1    
7.6    
8.2    
8.8    
9.4    
10.0    
10.6    
11.2    
11.8    
12.4    
12.9    
13.5    
14.1    
14.7    
15.3    
15.9    
16.5    
17.1    
17.6    
18.2    
18.8    
19.4    
20.0    
20.6    
21.2    
21.8    
22.4    
22.9    
23.5    
24.1    
24.7    
25.3    
25.9    
26.5    
27.1    
27.6    
28.2    
28.8    
29.4    
30.0    
30.6    
31.2    
31.8    
32.4    
32.9    
33.5    
34.1    
34.7    
35.3    
35.9    
36.5    
37.1    
37.6    
38.2    
38.8    
39.4    
40.0    
40.6    
41.2    
41.8    
42.4    
42.9    
43.5    
44.1    
44.7    
45.3    
45.9    
46.5    
47.1    
47.6    
48.2    
48.8    
49.4    
50.0    
50.6    
51.2    
51.8    
52.4    
52.9    
53.5    
54.1    
54.7    
55.3    
55.9    
56.5    
57.1    
57.6    
58.2    
58.8    
59.4    
60.0    
60.6    
61.2    
61.8    
62.4    
62.9    
63.5    
64.1    
64.7    
65.3    
65.9    
66.5    
67.1    
67.6    
68.2    
68.8    
69.4    
70.0    
70.6    
71.2    
71.8    
72.4    
72.9    
73.5    
74.1    
74.7    
75.3    
75.9    
76.5    
77.1    
77.6    
78.2    
78.8    
79.4    
80.0    
80.6    
81.2    
81.8    
82.4    
82.9    
83.5    
84.1    
84.7    
85.3    
85.9    
86.5    
87.1    
87.6    
88.2    
88.8    
89.4    
90.0    
90.6    
91.2    
91.8    
92.4    
92.9    
93.5    
94.1    
94.7    
95.3    
95.9    
96.5    
97.1    
97.6    
98.2    
98.8    
99.4    
-found 16 predictions from path traversal
Error with prediction: snap lend_intergenic: 208770, rend_intergenic: 205087  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 214750, rend_intergenic: 211509  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 217236, rend_intergenic: 215189  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 224483, rend_intergenic: 217903  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 231818, rend_intergenic: 225253  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 8 predictions persist after filtering for low support