-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_12/scaffold_12_517078-726615

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_12-snap.154-T1
Valid prediction for snap_scaffold_12-snap.138-T1
Valid prediction for snap_scaffold_12-snap.162-T1
Valid prediction for snap_scaffold_12-snap.150-T1
Sorry, intron length (9) is less than minimum required (10)
Valid prediction for GlimmerHMM_glimmerT_28724-T1
Valid prediction for GlimmerHMM_glimmerT_28747-T1
Valid prediction for snap_scaffold_12-snap.145-T1
Valid prediction for snap_scaffold_12-snap.148-T1
Valid prediction for GlimmerHMM_glimmerT_28730-T1
Valid prediction for snap_scaffold_12-snap.168-T1
Valid prediction for GlimmerHMM_glimmerT_28741-T1
Valid prediction for GlimmerHMM_glimmerT_28745-T1
Valid prediction for GlimmerHMM_glimmerT_28725-T1
Valid prediction for GlimmerHMM_glimmerT_28743-T1
Valid prediction for snap_scaffold_12-snap.161-T1
Valid prediction for GlimmerHMM_glimmerT_28723-T1
Valid prediction for GlimmerHMM_glimmerT_28736-T1
Valid prediction for GlimmerHMM_glimmerT_28746-T1
Valid prediction for Augustus_model.g19013.t1
Valid prediction for GlimmerHMM_glimmerT_28739-T1
Valid prediction for snap_scaffold_12-snap.143-T1
Valid prediction for GlimmerHMM_glimmerT_28748-T1
Valid prediction for Augustus_model.g19012.t1
Valid prediction for snap_scaffold_12-snap.141-T1
Valid prediction for snap_scaffold_12-snap.149-T1
Valid prediction for GlimmerHMM_glimmerT_28750-T1
Valid prediction for snap_scaffold_12-snap.147-T1
Valid prediction for GlimmerHMM_glimmerT_28744-T1
Valid prediction for snap_scaffold_12-snap.131-T1
Valid prediction for snap_scaffold_12-snap.157-T1
Valid prediction for Augustus_model.g19010.t1
Valid prediction for snap_scaffold_12-snap.165-T1
Valid prediction for GlimmerHMM_glimmerT_28728-T1
Valid prediction for snap_scaffold_12-snap.139-T1
Valid prediction for snap_scaffold_12-snap.135-T1
Valid prediction for snap_scaffold_12-snap.159-T1
Valid prediction for snap_scaffold_12-snap.132-T1
Valid prediction for snap_scaffold_12-snap.166-T1
Sorry, intron length (6) is less than minimum required (10)
Valid prediction for snap_scaffold_12-snap.167-T1
Valid prediction for snap_scaffold_12-snap.128-T1
Sorry, intron length (9) is less than minimum required (10)
Valid prediction for snap_scaffold_12-snap.152-T1
Valid prediction for snap_scaffold_12-snap.158-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_12-snap.142-T1
Valid prediction for GlimmerHMM_glimmerT_28735-T1
Valid prediction for snap_scaffold_12-snap.155-T1
Valid prediction for GlimmerHMM_glimmerT_28727-T1
Valid prediction for GlimmerHMM_glimmerT_28740-T1
Valid prediction for snap_scaffold_12-snap.151-T1
Valid prediction for GlimmerHMM_glimmerT_28729-T1
Valid prediction for snap_scaffold_12-snap.156-T1
Valid prediction for snap_scaffold_12-snap.127-T1
Valid prediction for GlimmerHMM_glimmerT_28749-T1
Valid prediction for Augustus_model.g19014.t1
Valid prediction for GlimmerHMM_glimmerT_28732-T1
Valid prediction for snap_scaffold_12-snap.160-T1
Valid prediction for snap_scaffold_12-snap.136-T1
Valid prediction for snap_scaffold_12-snap.144-T1
Valid prediction for snap_scaffold_12-snap.140-T1
Valid prediction for snap_scaffold_12-snap.153-T1
Valid prediction for snap_scaffold_12-snap.146-T1
Valid prediction for snap_scaffold_12-snap.164-T1
Valid prediction for GlimmerHMM_glimmerT_28737-T1
Valid prediction for snap_scaffold_12-snap.137-T1
Sorry, intron length (3) is less than minimum required (10)
Valid prediction for snap_scaffold_12-snap.133-T1
Valid prediction for GlimmerHMM_glimmerT_28733-T1
Valid prediction for GlimmerHMM_glimmerT_28731-T1
Valid prediction for Augustus_model.g19011.t1
Valid prediction for GlimmerHMM_glimmerT_28726-T1
Valid prediction for snap_scaffold_12-snap.130-T1
Valid prediction for GlimmerHMM_glimmerT_28734-T1
Valid prediction for snap_scaffold_12-snap.129-T1
Valid prediction for GlimmerHMM_glimmerT_28742-T1
Valid prediction for Augustus_model.g19009.t1
Valid prediction for GlimmerHMM_glimmerT_28738-T1
Valid prediction for snap_scaffold_12-snap.134-T1
Valid prediction for snap_scaffold_12-snap.163-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 11993, rend_intergenic: 3550  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 27627, rend_intergenic: 23771  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 49962, rend_intergenic: 41518  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 64643, rend_intergenic: 53460  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 71001, rend_intergenic: 68014  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 73280, rend_intergenic: 71109  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 77999, rend_intergenic: 73282  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 79678, rend_intergenic: 78088  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 84562, rend_intergenic: 84468  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 106941, rend_intergenic: 85501  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 113664, rend_intergenic: 107720  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 114765, rend_intergenic: 113703  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 115510, rend_intergenic: 114932  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 118230, rend_intergenic: 117085  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 127968, rend_intergenic: 119267  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 140505, rend_intergenic: 128004  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 156680, rend_intergenic: 141043  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 159778, rend_intergenic: 156965  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 205065, rend_intergenic: 160214  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 209538
-exon list size: 305


building trellis

0.3    
0.7    
1.0    
1.3    
1.6    
2.0    
2.3    
2.6    
2.9    
3.3    
3.6    
3.9    
4.2    
4.6    
4.9    
5.2    
5.5    
5.9    
6.2    
6.5    
6.8    
7.2    
7.5    
7.8    
8.1    
8.5    
8.8    
9.1    
9.4    
9.8    
10.1    
10.4    
10.7    
11.1    
11.4    
11.7    
12.1    
12.4    
12.7    
13.0    
13.4    
13.7    
14.0    
14.3    
14.7    
15.0    
15.3    
15.6    
16.0    
16.3    
16.6    
16.9    
17.3    
17.6    
17.9    
18.2    
18.6    
18.9    
19.2    
19.5    
19.9    
20.2    
20.5    
20.8    
21.2    
21.5    
21.8    
22.1    
22.5    
22.8    
23.1    
23.5    
23.8    
24.1    
24.4    
24.8    
25.1    
25.4    
25.7    
26.1    
26.4    
26.7    
27.0    
27.4    
27.7    
28.0    
28.3    
28.7    
29.0    
29.3    
29.6    
30.0    
30.3    
30.6    
30.9    
31.3    
31.6    
31.9    
32.2    
32.6    
32.9    
33.2    
33.6    
33.9    
34.2    
34.5    
34.9    
35.2    
35.5    
35.8    
36.2    
36.5    
36.8    
37.1    
37.5    
37.8    
38.1    
38.4    
38.8    
39.1    
39.4    
39.7    
40.1    
40.4    
40.7    
41.0    
41.4    
41.7    
42.0    
42.3    
42.7    
43.0    
43.3    
43.6    
44.0    
44.3    
44.6    
45.0    
45.3    
45.6    
45.9    
46.3    
46.6    
46.9    
47.2    
47.6    
47.9    
48.2    
48.5    
48.9    
49.2    
49.5    
49.8    
50.2    
50.5    
50.8    
51.1    
51.5    
51.8    
52.1    
52.4    
52.8    
53.1    
53.4    
53.7    
54.1    
54.4    
54.7    
55.0    
55.4    
55.7    
56.0    
56.4    
56.7    
57.0    
57.3    
57.7    
58.0    
58.3    
58.6    
59.0    
59.3    
59.6    
59.9    
60.3    
60.6    
60.9    
61.2    
61.6    
61.9    
62.2    
62.5    
62.9    
63.2    
63.5    
63.8    
64.2    
64.5    
64.8    
65.1    
65.5    
65.8    
66.1    
66.4    
66.8    
67.1    
67.4    
67.8    
68.1    
68.4    
68.7    
69.1    
69.4    
69.7    
70.0    
70.4    
70.7    
71.0    
71.3    
71.7    
72.0    
72.3    
72.6    
73.0    
73.3    
73.6    
73.9    
74.3    
74.6    
74.9    
75.2    
75.6    
75.9    
76.2    
76.5    
76.9    
77.2    
77.5    
77.9    
78.2    
78.5    
78.8    
79.2    
79.5    
79.8    
80.1    
80.5    
80.8    
81.1    
81.4    
81.8    
82.1    
82.4    
82.7    
83.1    
83.4    
83.7    
84.0    
84.4    
84.7    
85.0    
85.3    
85.7    
86.0    
86.3    
86.6    
87.0    
87.3    
87.6    
87.9    
88.3    
88.6    
88.9    
89.3    
89.6    
89.9    
90.2    
90.6    
90.9    
91.2    
91.5    
91.9    
92.2    
92.5    
92.8    
93.2    
93.5    
93.8    
94.1    
94.5    
94.8    
95.1    
95.4    
95.8    
96.1    
96.4    
96.7    
97.1    
97.4    
97.7    
98.0    
98.4    
98.7    
99.0    
99.3    
99.7    
-found 31 predictions from path traversal
Error with prediction: snap lend_intergenic: 11993, rend_intergenic: 3550  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 27627, rend_intergenic: 23771  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 49962, rend_intergenic: 41518  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 64643, rend_intergenic: 53460  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 71001, rend_intergenic: 68014  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 73280, rend_intergenic: 71109  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 77999, rend_intergenic: 73282  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 79678, rend_intergenic: 78088  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 84562, rend_intergenic: 84468  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 106941, rend_intergenic: 85501  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 113664, rend_intergenic: 107720  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 114765, rend_intergenic: 113703  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 115510, rend_intergenic: 114932  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 118230, rend_intergenic: 117085  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 127968, rend_intergenic: 119267  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 140505, rend_intergenic: 128004  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 156680, rend_intergenic: 141043  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 159778, rend_intergenic: 156965  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 205065, rend_intergenic: 160214  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 7 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 1 - 23477
-exon list size: 23


building trellis

4.0    
8.0    
12.0    
16.0    
20.0    
24.0    
28.0    
32.0    
36.0    
40.0    
44.0    
48.0    
52.0    
56.0    
60.0    
64.0    
68.0    
72.0    
76.0    
80.0    
84.0    
88.0    
92.0    
96.0    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 7149 - 23477
-exon list size: 15


building trellis

5.9    
11.8    
17.6    
23.5    
29.4    
35.3    
41.2    
47.1    
52.9    
58.8    
64.7    
70.6    
76.5    
82.4    
88.2    
94.1    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support