-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_12/scaffold_12_4388133-4599709

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_12-snap.920-T1
Valid prediction for snap_scaffold_12-snap.933-T1
Valid prediction for snap_scaffold_12-snap.915-T1
Valid prediction for snap_scaffold_12-snap.922-T1
Sorry, intron length (4) is less than minimum required (10)
Valid prediction for snap_scaffold_12-snap.926-T1
Valid prediction for snap_scaffold_12-snap.923-T1
Valid prediction for snap_scaffold_12-snap.921-T1
Valid prediction for snap_scaffold_12-snap.904-T1
Valid prediction for snap_scaffold_12-snap.913-T1
Valid prediction for snap_scaffold_12-snap.891-T1
Valid prediction for GlimmerHMM_glimmerT_29222-T1
Valid prediction for Augustus_model.g19283.t1
Valid prediction for GlimmerHMM_glimmerT_29232-T1
Valid prediction for Augustus_model.g19290.t1
Couldn't classify 199580, 199924
Sorry, prediction pasa_asmbl_8407.p1 fails validation.
(GTA)	 CT	199580-199924	GT	GAG
Valid prediction for snap_scaffold_12-snap.896-T1
Valid prediction for snap_scaffold_12-snap.930-T1
Sorry, intron length (7) is less than minimum required (10)
Valid prediction for snap_scaffold_12-snap.907-T1
Valid prediction for snap_scaffold_12-snap.887-T1
Valid prediction for snap_scaffold_12-snap.894-T1
Valid prediction for snap_scaffold_12-snap.929-T1
Valid prediction for Augustus_model.g19292.t1
Valid prediction for snap_scaffold_12-snap.898-T1
Valid prediction for GlimmerHMM_glimmerT_29227-T1
Valid prediction for GlimmerHMM_glimmerT_29215-T1
Couldn't classify 30207, 30489
Sorry, prediction pasa_asmbl_7611.p1 fails validation.
(AGG)	 GC	30207-30489	GT	AGG
(AGA)	 AG	30640-30689	GT	AGG
(GGA)	 AG	30895-30988	GT	GGG
(GGA)	 AG	31243-31325	CC	AGC
-recovered pasa_asmbl_7611.p1, terminal, 31243, 31325
-recovered pasa_asmbl_7611.p1, internal, 30640, 30689
-recovered pasa_asmbl_7611.p1, internal, 30895, 30988
Couldn't classify 35709, 35860
Sorry, prediction pasa_asmbl_7614.p2 fails validation.
(ATG)	 CC	34005-34059	GT	CGG
(GTT)	 AG	34844-35185	GT	AGG
(GAC)	 AG	35435-35563	GT	CGG
(ACA)	 AG	35709-35860	AC	CCA
-recovered pasa_asmbl_7614.p2, initial, 34005, 34059
-recovered pasa_asmbl_7614.p2, internal, 34844, 35185
-recovered pasa_asmbl_7614.p2, internal, 35435, 35563
Valid prediction for Augustus_model.g19284.t1
Valid prediction for snap_scaffold_12-snap.927-T1
Valid prediction for Augustus_model.g19286.t1
Valid prediction for Augustus_model.g19287.t1
Valid prediction for GlimmerHMM_glimmerT_29245-T1
Valid prediction for Augustus_model.g19291.t1
Valid prediction for snap_scaffold_12-snap.935-T1
Valid prediction for Augustus_model.g19288.t1
Valid prediction for snap_scaffold_12-snap.900-T1
Couldn't classify 37843, 37908
Couldn't classify 37976, 38104
Sorry, prediction CodingQuarry_transcript_10184-T1 fails validation.
(ATG)	 AC	37438-37534	GT	AGG
(ATC)	 AG	37843-37908	NC	TCN
(AAC)	 GT	37976-38104	GT	ACG
(GGA)	 AG	38371-38401	GT	ATG
(ATC)	 AG	38651-38711	AC	AGA
-recovered CodingQuarry_transcript_10184-T1, initial, 37438, 37534
-recovered CodingQuarry_transcript_10184-T1, terminal, 38651, 38711
-recovered CodingQuarry_transcript_10184-T1, internal, 38371, 38401
Valid prediction for GlimmerHMM_glimmerT_29221-T1
Valid prediction for GlimmerHMM_glimmerT_29237-T1
Valid prediction for CodingQuarry_transcript_10183-T1
Couldn't classify 199888, 200187
Sorry, prediction pasa_asmbl_8408.p1 fails validation.
(GAG)	 CC	199888-200187	AA	GAA
Valid prediction for GlimmerHMM_glimmerT_29242-T1
Valid prediction for snap_scaffold_12-snap.918-T1
Valid prediction for snap_scaffold_12-snap.893-T1
Valid prediction for GlimmerHMM_glimmerT_29230-T1
Valid prediction for snap_scaffold_12-snap.903-T1
Valid prediction for snap_scaffold_12-snap.925-T1
Valid prediction for snap_scaffold_12-snap.889-T1
Valid prediction for Augustus_model.g19280.t1
Valid prediction for snap_scaffold_12-snap.901-T1
Valid prediction for GlimmerHMM_glimmerT_29247-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_12-snap.924-T1
Valid prediction for Augustus_model.g19293.t1
Couldn't classify 33806, 34174
Sorry, prediction pasa_asmbl_8403.p1 fails validation.
(GAG)	 CA	33806-34174	AT	AGA
Valid prediction for GlimmerHMM_glimmerT_29217-T1
Valid prediction for GlimmerHMM_glimmerT_29218-T1
Valid prediction for GlimmerHMM_glimmerT_29241-T1
Valid prediction for snap_scaffold_12-snap.902-T1
Valid prediction for GlimmerHMM_glimmerT_29228-T1
Valid prediction for CodingQuarry_transcript_10187-T1
Valid prediction for CodingQuarry_transcript_10186-T1
Valid prediction for GlimmerHMM_glimmerT_29234-T1
Valid prediction for snap_scaffold_12-snap.906-T1
Valid prediction for GlimmerHMM_glimmerT_29219-T1
Valid prediction for snap_scaffold_12-snap.897-T1
Valid prediction for snap_scaffold_12-snap.888-T1
Valid prediction for snap_scaffold_12-snap.895-T1
Valid prediction for HiQ_model.g19297.t1
Valid prediction for Augustus_model.g19295.t1
Valid prediction for GlimmerHMM_glimmerT_29243-T1
Valid prediction for GlimmerHMM_glimmerT_29244-T1
Valid prediction for snap_scaffold_12-snap.928-T1
Valid prediction for snap_scaffold_12-snap.912-T1
Valid prediction for GlimmerHMM_glimmerT_29216-T1
Valid prediction for GlimmerHMM_glimmerT_29235-T1
Valid prediction for CodingQuarry_transcript_10188-T1
Valid prediction for snap_scaffold_12-snap.917-T1
Valid prediction for snap_scaffold_12-snap.932-T1
Valid prediction for GlimmerHMM_glimmerT_29246-T1
Valid prediction for snap_scaffold_12-snap.914-T1
Valid prediction for snap_scaffold_12-snap.908-T1
Valid prediction for snap_scaffold_12-snap.910-T1
Valid prediction for pasa_asmbl_8404.p1
Couldn't classify 139221, 139745
Sorry, prediction pasa_asmbl_8396.p1 fails validation.
(TTC)	 CC	139221-139745	AC	GAA
Valid prediction for snap_scaffold_12-snap.911-T1
Valid prediction for CodingQuarry_transcript_10189-T1
Valid prediction for GlimmerHMM_glimmerT_29239-T1
Valid prediction for GlimmerHMM_glimmerT_29248-T1
Valid prediction for snap_scaffold_12-snap.916-T1
Valid prediction for GlimmerHMM_glimmerT_29238-T1
Valid prediction for Augustus_model.g19289.t1
Couldn't classify 50675, 50836
Sorry, prediction pasa_asmbl_8399.p1 fails validation.
(ATG)	 CC	44647-44678	GT	GTG
(CCT)	 AG	46907-46979	GT	ATG
(GTG)	 AG	49063-49139	GT	TGG
(GTT)	 AG	50199-50319	GT	AGG
(GAG)	 AG	50470-50583	GT	AGG
(GGG)	 AG	50675-50836	AG	AGA
-recovered pasa_asmbl_8399.p1, initial, 44647, 44678
-recovered pasa_asmbl_8399.p1, internal, 46907, 46979
-recovered pasa_asmbl_8399.p1, internal, 49063, 49139
-recovered pasa_asmbl_8399.p1, internal, 50199, 50319
-recovered pasa_asmbl_8399.p1, internal, 50470, 50583
Valid prediction for snap_scaffold_12-snap.899-T1
Valid prediction for snap_scaffold_12-snap.905-T1
Valid prediction for snap_scaffold_12-snap.909-T1
Valid prediction for GlimmerHMM_glimmerT_29220-T1
Valid prediction for GlimmerHMM_glimmerT_29223-T1
Valid prediction for snap_scaffold_12-snap.919-T1
Valid prediction for GlimmerHMM_glimmerT_29233-T1
Valid prediction for Augustus_model.g19285.t1
Couldn't classify 34689, 34723
Couldn't classify 35357, 35487
Sorry, prediction pasa_asmbl_9191.p2 fails validation.
(CCC)	 AC	34689-34723	GT	AGG
(GTT)	 AG	34900-35114	GT	CCG
(AGA)	 AG	35357-35487	CG	TCC
-recovered pasa_asmbl_9191.p2, internal, 34900, 35114
Valid prediction for GlimmerHMM_glimmerT_29226-T1
Valid prediction for GlimmerHMM_glimmerT_29240-T1
Couldn't classify 9961, 10098
Couldn't classify 10143, 10289
Sorry, prediction CodingQuarry_transcript_10191-T1 fails validation.
(ATG)	 AG	9961-10098	CA	CAC
(GAC)	 CA	10143-10289	AC	AGA
Valid prediction for snap_scaffold_12-snap.934-T1
Valid prediction for snap_scaffold_12-snap.931-T1
Valid prediction for CodingQuarry_transcript_10185-T1
Valid prediction for HiQ_model.g19296.t1
Couldn't classify 37334, 37343
Sorry, prediction pasa_asmbl_8401.p1 fails validation.
(GAC)	 AG	37334-37343	GT	AGG
(AAC)	 AG	37447-37721	GT	GGG
(GGT)	 AG	37888-38172	GT	AAG
(CCT)	 AG	38260-38431	GT	CAG
(AGC)	 AG	38547-38637	GT	CGG
(GTT)	 AG	38907-39037	GT	TGG
(GTC)	 AG	39414-39533	GT	GGG
(AGG)	 AG	40560-40583	GT	AGG
(AGG)	 AG	41584-41723	GT	AGG
(GTG)	 AG	42027-42203	GT	AGG
(GTT)	 AG	42437-42571	GT	AGG
(GTG)	 AG	42705-42785	TG	AAT
-recovered pasa_asmbl_8401.p1, terminal, 42705, 42785
-recovered pasa_asmbl_8401.p1, internal, 37334, 37343
-recovered pasa_asmbl_8401.p1, internal, 37447, 37721
-recovered pasa_asmbl_8401.p1, internal, 37888, 38172
-recovered pasa_asmbl_8401.p1, internal, 38260, 38431
-recovered pasa_asmbl_8401.p1, internal, 38547, 38637
-recovered pasa_asmbl_8401.p1, internal, 38907, 39037
-recovered pasa_asmbl_8401.p1, internal, 39414, 39533
-recovered pasa_asmbl_8401.p1, internal, 40560, 40583
-recovered pasa_asmbl_8401.p1, internal, 41584, 41723
-recovered pasa_asmbl_8401.p1, internal, 42027, 42203
-recovered pasa_asmbl_8401.p1, internal, 42437, 42571
Valid prediction for GlimmerHMM_glimmerT_29249-T1
Valid prediction for GlimmerHMM_glimmerT_29225-T1
Valid prediction for snap_scaffold_12-snap.890-T1
Valid prediction for GlimmerHMM_glimmerT_29236-T1
Valid prediction for Augustus_model.g19282.t1
Valid prediction for GlimmerHMM_glimmerT_29224-T1
Valid prediction for Augustus_model.g19281.t1
Valid prediction for GlimmerHMM_glimmerT_29231-T1
Valid prediction for snap_scaffold_12-snap.892-T1
Valid prediction for GlimmerHMM_glimmerT_29229-T1
Couldn't classify 138409, 139127
Sorry, prediction pasa_asmbl_8397.p1 fails validation.
(ATG)	 GA	137523-137733	GT	AGG
(ACA)	 AG	138409-139127	CC	GGC
-recovered pasa_asmbl_8397.p1, initial, 137523, 137733
Couldn't classify 9961, 10052
Couldn't classify 10147, 10333
Sorry, prediction CodingQuarry_transcript_10190-T1 fails validation.
(ATG)	 AG	9961-10052	GA	CAG
(CAG)	 CA	10147-10333	CA	AAC
Couldn't classify 2631, 2636
Couldn't classify 8974, 9031
Sorry, prediction pasa_asmbl_8410.p1 fails validation.
(GAT)	 TC	2631-2636	GT	TGG
(GTC)	 AG	2780-2948	GT	GGG
(GTA)	 AG	5579-5733	GT	AGG
(GTG)	 AG	6006-6150	GT	AGG
(GCA)	 AG	7209-7415	GT	GGG
(GGC)	 AG	7581-7795	GT	AGG
(ATG)	 AG	7918-8048	GT	AGG
(TTT)	 AG	8306-8433	GT	AGG
(GTC)	 AG	8682-8799	GT	AGG
(GTT)	 AG	8974-9031	GT	GGG
-recovered pasa_asmbl_8410.p1, initial, 7918, 8048
add_exon() Sorry, pasa_asmbl_8410.p1 6006-6150-terminal-3 is invalid.
-recovered pasa_asmbl_8410.p1, terminal, 6006, 6150
-recovered pasa_asmbl_8410.p1, internal, 2780, 2948
-recovered pasa_asmbl_8410.p1, internal, 5579, 5733
-recovered pasa_asmbl_8410.p1, internal, 6006, 6150
-recovered pasa_asmbl_8410.p1, internal, 7209, 7415
-recovered pasa_asmbl_8410.p1, internal, 7581, 7795
-recovered pasa_asmbl_8410.p1, internal, 7918, 8048
-recovered pasa_asmbl_8410.p1, internal, 8306, 8433
-recovered pasa_asmbl_8410.p1, internal, 8682, 8799
-recovered pasa_asmbl_8410.p1, internal, 8974, 9031
Valid prediction for Augustus_model.g19294.t1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 7883, rend_intergenic: 4460  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 17302, rend_intergenic: 14018  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 18395, rend_intergenic: 17306  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 27783, rend_intergenic: 27012  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 38081, rend_intergenic: 34005  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 38775, rend_intergenic: 38465  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 44998, rend_intergenic: 39348  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 45888, rend_intergenic: 45066  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 52215, rend_intergenic: 46051  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 66948, rend_intergenic: 53655  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 100741, rend_intergenic: 76029  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 102080, rend_intergenic: 101213  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 108786, rend_intergenic: 105458  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 118239, rend_intergenic: 108842  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 120507, rend_intergenic: 118941  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 125214, rend_intergenic: 122794  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 153144, rend_intergenic: 125368  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 166038, rend_intergenic: 159297  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 172193, rend_intergenic: 169819  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 178717, rend_intergenic: 175044  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 182602, rend_intergenic: 179490  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 195072, rend_intergenic: 185734  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 198743, rend_intergenic: 195629  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 209019, rend_intergenic: 200451  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 211577
-exon list size: 500


building trellis

0.2    
0.4    
0.6    
0.8    
1.0    
1.2    
1.4    
1.6    
1.8    
2.0    
2.2    
2.4    
2.6    
2.8    
3.0    
3.2    
3.4    
3.6    
3.8    
4.0    
4.2    
4.4    
4.6    
4.8    
5.0    
5.2    
5.4    
5.6    
5.8    
6.0    
6.2    
6.4    
6.6    
6.8    
7.0    
7.2    
7.4    
7.6    
7.8    
8.0    
8.2    
8.4    
8.6    
8.8    
9.0    
9.2    
9.4    
9.6    
9.8    
10.0    
10.2    
10.4    
10.6    
10.8    
11.0    
11.2    
11.4    
11.6    
11.8    
12.0    
12.2    
12.4    
12.5    
12.7    
12.9    
13.1    
13.3    
13.5    
13.7    
13.9    
14.1    
14.3    
14.5    
14.7    
14.9    
15.1    
15.3    
15.5    
15.7    
15.9    
16.1    
16.3    
16.5    
16.7    
16.9    
17.1    
17.3    
17.5    
17.7    
17.9    
18.1    
18.3    
18.5    
18.7    
18.9    
19.1    
19.3    
19.5    
19.7    
19.9    
20.1    
20.3    
20.5    
20.7    
20.9    
21.1    
21.3    
21.5    
21.7    
21.9    
22.1    
22.3    
22.5    
22.7    
22.9    
23.1    
23.3    
23.5    
23.7    
23.9    
24.1    
24.3    
24.5    
24.7    
24.9    
25.1    
25.3    
25.5    
25.7    
25.9    
26.1    
26.3    
26.5    
26.7    
26.9    
27.1    
27.3    
27.5    
27.7    
27.9    
28.1    
28.3    
28.5    
28.7    
28.9    
29.1    
29.3    
29.5    
29.7    
29.9    
30.1    
30.3    
30.5    
30.7    
30.9    
31.1    
31.3    
31.5    
31.7    
31.9    
32.1    
32.3    
32.5    
32.7    
32.9    
33.1    
33.3    
33.5    
33.7    
33.9    
34.1    
34.3    
34.5    
34.7    
34.9    
35.1    
35.3    
35.5    
35.7    
35.9    
36.1    
36.3    
36.5    
36.7    
36.9    
37.1    
37.3    
37.5    
37.6    
37.8    
38.0    
38.2    
38.4    
38.6    
38.8    
39.0    
39.2    
39.4    
39.6    
39.8    
40.0    
40.2    
40.4    
40.6    
40.8    
41.0    
41.2    
41.4    
41.6    
41.8    
42.0    
42.2    
42.4    
42.6    
42.8    
43.0    
43.2    
43.4    
43.6    
43.8    
44.0    
44.2    
44.4    
44.6    
44.8    
45.0    
45.2    
45.4    
45.6    
45.8    
46.0    
46.2    
46.4    
46.6    
46.8    
47.0    
47.2    
47.4    
47.6    
47.8    
48.0    
48.2    
48.4    
48.6    
48.8    
49.0    
49.2    
49.4    
49.6    
49.8    
50.0    
50.2    
50.4    
50.6    
50.8    
51.0    
51.2    
51.4    
51.6    
51.8    
52.0    
52.2    
52.4    
52.6    
52.8    
53.0    
53.2    
53.4    
53.6    
53.8    
54.0    
54.2    
54.4    
54.6    
54.8    
55.0    
55.2    
55.4    
55.6    
55.8    
56.0    
56.2    
56.4    
56.6    
56.8    
57.0    
57.2    
57.4    
57.6    
57.8    
58.0    
58.2    
58.4    
58.6    
58.8    
59.0    
59.2    
59.4    
59.6    
59.8    
60.0    
60.2    
60.4    
60.6    
60.8    
61.0    
61.2    
61.4    
61.6    
61.8    
62.0    
62.2    
62.4    
62.5    
62.7    
62.9    
63.1    
63.3    
63.5    
63.7    
63.9    
64.1    
64.3    
64.5    
64.7    
64.9    
65.1    
65.3    
65.5    
65.7    
65.9    
66.1    
66.3    
66.5    
66.7    
66.9    
67.1    
67.3    
67.5    
67.7    
67.9    
68.1    
68.3    
68.5    
68.7    
68.9    
69.1    
69.3    
69.5    
69.7    
69.9    
70.1    
70.3    
70.5    
70.7    
70.9    
71.1    
71.3    
71.5    
71.7    
71.9    
72.1    
72.3    
72.5    
72.7    
72.9    
73.1    
73.3    
73.5    
73.7    
73.9    
74.1    
74.3    
74.5    
74.7    
74.9    
75.1    
75.3    
75.5    
75.7    
75.9    
76.1    
76.3    
76.5    
76.7    
76.9    
77.1    
77.3    
77.5    
77.7    
77.9    
78.1    
78.3    
78.5    
78.7    
78.9    
79.1    
79.3    
79.5    
79.7    
79.9    
80.1    
80.3    
80.5    
80.7    
80.9    
81.1    
81.3    
81.5    
81.7    
81.9    
82.1    
82.3    
82.5    
82.7    
82.9    
83.1    
83.3    
83.5    
83.7    
83.9    
84.1    
84.3    
84.5    
84.7    
84.9    
85.1    
85.3    
85.5    
85.7    
85.9    
86.1    
86.3    
86.5    
86.7    
86.9    
87.1    
87.3    
87.5    
87.6    
87.8    
88.0    
88.2    
88.4    
88.6    
88.8    
89.0    
89.2    
89.4    
89.6    
89.8    
90.0    
90.2    
90.4    
90.6    
90.8    
91.0    
91.2    
91.4    
91.6    
91.8    
92.0    
92.2    
92.4    
92.6    
92.8    
93.0    
93.2    
93.4    
93.6    
93.8    
94.0    
94.2    
94.4    
94.6    
94.8    
95.0    
95.2    
95.4    
95.6    
95.8    
96.0    
96.2    
96.4    
96.6    
96.8    
97.0    
97.2    
97.4    
97.6    
97.8    
98.0    
98.2    
98.4    
98.6    
98.8    
99.0    
99.2    
99.4    
99.6    
99.8    
-found 35 predictions from path traversal
Error with prediction: snap lend_intergenic: 7883, rend_intergenic: 4460  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 17302, rend_intergenic: 14018  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 18395, rend_intergenic: 17306  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 27783, rend_intergenic: 27012  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 38081, rend_intergenic: 34005  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 38775, rend_intergenic: 38465  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 44998, rend_intergenic: 39348  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 45888, rend_intergenic: 45066  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 52215, rend_intergenic: 46051  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 66948, rend_intergenic: 53655  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 100741, rend_intergenic: 76029  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 102080, rend_intergenic: 101213  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 108786, rend_intergenic: 105458  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 118239, rend_intergenic: 108842  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 120507, rend_intergenic: 118941  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 125214, rend_intergenic: 122794  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 153144, rend_intergenic: 125368  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 166038, rend_intergenic: 159297  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 172193, rend_intergenic: 169819  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 178717, rend_intergenic: 175044  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 182602, rend_intergenic: 179490  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 195072, rend_intergenic: 185734  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 198743, rend_intergenic: 195629  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 209019, rend_intergenic: 200451  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 18 predictions persist after filtering for low support