-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_12/scaffold_12_3514153-3688151

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for Augustus_model.g19206.t1
Valid prediction for snap_scaffold_12-snap.719-T1
Valid prediction for Augustus_model.g19201.t1
Valid prediction for snap_scaffold_12-snap.727-T1
Valid prediction for snap_scaffold_12-snap.741-T1
Valid prediction for GlimmerHMM_glimmerT_29103-T1
Valid prediction for Augustus_model.g19210.t1
Valid prediction for snap_scaffold_12-snap.730-T1
Valid prediction for GlimmerHMM_glimmerT_29111-T1
Valid prediction for snap_scaffold_12-snap.735-T1
Valid prediction for GlimmerHMM_glimmerT_29117-T1
Valid prediction for GlimmerHMM_glimmerT_29112-T1
Valid prediction for GlimmerHMM_glimmerT_29113-T1
Valid prediction for snap_scaffold_12-snap.714-T1
Valid prediction for GlimmerHMM_glimmerT_29104-T1
Valid prediction for snap_scaffold_12-snap.718-T1
Valid prediction for Augustus_model.g19207.t1
Valid prediction for GlimmerHMM_glimmerT_29106-T1
Valid prediction for snap_scaffold_12-snap.740-T1
Valid prediction for snap_scaffold_12-snap.728-T1
Valid prediction for snap_scaffold_12-snap.724-T1
Valid prediction for Augustus_model.g19204.t1
Valid prediction for snap_scaffold_12-snap.736-T1
Valid prediction for snap_scaffold_12-snap.733-T1
Valid prediction for snap_scaffold_12-snap.737-T1
Valid prediction for GlimmerHMM_glimmerT_29105-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_12-snap.712-T1
Valid prediction for snap_scaffold_12-snap.731-T1
Valid prediction for Augustus_model.g19209.t1
Valid prediction for Augustus_model.g19202.t1
Valid prediction for snap_scaffold_12-snap.725-T1
Valid prediction for snap_scaffold_12-snap.715-T1
Valid prediction for snap_scaffold_12-snap.710-T1
Valid prediction for snap_scaffold_12-snap.721-T1
Valid prediction for GlimmerHMM_glimmerT_29109-T1
Valid prediction for GlimmerHMM_glimmerT_29119-T1
Valid prediction for snap_scaffold_12-snap.709-T1
Valid prediction for snap_scaffold_12-snap.722-T1
Valid prediction for Augustus_model.g19203.t1
Valid prediction for GlimmerHMM_glimmerT_29110-T1
Valid prediction for GlimmerHMM_glimmerT_29114-T1
Valid prediction for snap_scaffold_12-snap.713-T1
Valid prediction for GlimmerHMM_glimmerT_29108-T1
Valid prediction for Augustus_model.g19200.t1
Valid prediction for GlimmerHMM_glimmerT_29107-T1
Valid prediction for snap_scaffold_12-snap.711-T1
Valid prediction for snap_scaffold_12-snap.716-T1
Valid prediction for snap_scaffold_12-snap.734-T1
Valid prediction for GlimmerHMM_glimmerT_29101-T1
Valid prediction for GlimmerHMM_glimmerT_29116-T1
Valid prediction for snap_scaffold_12-snap.732-T1
Valid prediction for snap_scaffold_12-snap.720-T1
Valid prediction for GlimmerHMM_glimmerT_29118-T1
Valid prediction for snap_scaffold_12-snap.708-T1
Valid prediction for snap_scaffold_12-snap.729-T1
Valid prediction for snap_scaffold_12-snap.739-T1
Valid prediction for GlimmerHMM_glimmerT_29115-T1
Valid prediction for snap_scaffold_12-snap.738-T1
Valid prediction for Augustus_model.g19205.t1
Valid prediction for Augustus_model.g19199.t1
Valid prediction for snap_scaffold_12-snap.726-T1
Valid prediction for GlimmerHMM_glimmerT_29102-T1
Valid prediction for snap_scaffold_12-snap.723-T1
Valid prediction for Augustus_model.g19208.t1
Valid prediction for snap_scaffold_12-snap.717-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 39776, rend_intergenic: 36851  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 40436, rend_intergenic: 40057  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 58780, rend_intergenic: 50418  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 62229, rend_intergenic: 58933  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 81259, rend_intergenic: 79965  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 132304, rend_intergenic: 129113  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 160690, rend_intergenic: 152100  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 165580, rend_intergenic: 160927  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 173999
-exon list size: 200


building trellis

0.5    
1.0    
1.5    
2.0    
2.5    
3.0    
3.5    
4.0    
4.5    
5.0    
5.4    
5.9    
6.4    
6.9    
7.4    
7.9    
8.4    
8.9    
9.4    
9.9    
10.4    
10.9    
11.4    
11.9    
12.4    
12.9    
13.4    
13.9    
14.4    
14.9    
15.3    
15.8    
16.3    
16.8    
17.3    
17.8    
18.3    
18.8    
19.3    
19.8    
20.3    
20.8    
21.3    
21.8    
22.3    
22.8    
23.3    
23.8    
24.3    
24.8    
25.2    
25.7    
26.2    
26.7    
27.2    
27.7    
28.2    
28.7    
29.2    
29.7    
30.2    
30.7    
31.2    
31.7    
32.2    
32.7    
33.2    
33.7    
34.2    
34.7    
35.1    
35.6    
36.1    
36.6    
37.1    
37.6    
38.1    
38.6    
39.1    
39.6    
40.1    
40.6    
41.1    
41.6    
42.1    
42.6    
43.1    
43.6    
44.1    
44.6    
45.0    
45.5    
46.0    
46.5    
47.0    
47.5    
48.0    
48.5    
49.0    
49.5    
50.0    
50.5    
51.0    
51.5    
52.0    
52.5    
53.0    
53.5    
54.0    
54.5    
55.0    
55.4    
55.9    
56.4    
56.9    
57.4    
57.9    
58.4    
58.9    
59.4    
59.9    
60.4    
60.9    
61.4    
61.9    
62.4    
62.9    
63.4    
63.9    
64.4    
64.9    
65.3    
65.8    
66.3    
66.8    
67.3    
67.8    
68.3    
68.8    
69.3    
69.8    
70.3    
70.8    
71.3    
71.8    
72.3    
72.8    
73.3    
73.8    
74.3    
74.8    
75.2    
75.7    
76.2    
76.7    
77.2    
77.7    
78.2    
78.7    
79.2    
79.7    
80.2    
80.7    
81.2    
81.7    
82.2    
82.7    
83.2    
83.7    
84.2    
84.7    
85.1    
85.6    
86.1    
86.6    
87.1    
87.6    
88.1    
88.6    
89.1    
89.6    
90.1    
90.6    
91.1    
91.6    
92.1    
92.6    
93.1    
93.6    
94.1    
94.6    
95.0    
95.5    
96.0    
96.5    
97.0    
97.5    
98.0    
98.5    
99.0    
99.5    
-found 26 predictions from path traversal
Error with prediction: snap lend_intergenic: 39776, rend_intergenic: 36851  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 40436, rend_intergenic: 40057  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 58780, rend_intergenic: 50418  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 62229, rend_intergenic: 58933  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 81259, rend_intergenic: 79965  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 132304, rend_intergenic: 129113  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 160690, rend_intergenic: 152100  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 165580, rend_intergenic: 160927  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 14 predictions persist after filtering for low support