-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_12/scaffold_12_16645704-16881747

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_30853-T1
Valid prediction for GlimmerHMM_glimmerT_30876-T1
Valid prediction for snap_scaffold_12-snap.3224-T1
Valid prediction for GlimmerHMM_glimmerT_30877-T1
Valid prediction for snap_scaffold_12-snap.3220-T1
Valid prediction for snap_scaffold_12-snap.3194-T1
Valid prediction for GlimmerHMM_glimmerT_30861-T1
Valid prediction for Augustus_model.g20466.t1
Valid prediction for Augustus_model.g20464.t1
Valid prediction for GlimmerHMM_glimmerT_30850-T1
Valid prediction for GlimmerHMM_glimmerT_30851-T1
Valid prediction for snap_scaffold_12-snap.3206-T1
Valid prediction for Augustus_model.g20455.t1
Valid prediction for GlimmerHMM_glimmerT_30873-T1
Valid prediction for GlimmerHMM_glimmerT_30867-T1
Valid prediction for snap_scaffold_12-snap.3197-T1
Valid prediction for snap_scaffold_12-snap.3222-T1
Valid prediction for snap_scaffold_12-snap.3225-T1
Sorry, intron length (6) is less than minimum required (10)
Valid prediction for Augustus_model.g20475.t1
Valid prediction for GlimmerHMM_glimmerT_30858-T1
Valid prediction for GlimmerHMM_glimmerT_30847-T1
Valid prediction for snap_scaffold_12-snap.3223-T1
Valid prediction for Augustus_model.g20452.t1
Valid prediction for Augustus_model.g20450.t1
Valid prediction for snap_scaffold_12-snap.3200-T1
Valid prediction for GlimmerHMM_glimmerT_30870-T1
Valid prediction for snap_scaffold_12-snap.3215-T1
Valid prediction for snap_scaffold_12-snap.3207-T1
Valid prediction for Augustus_model.g20470.t1
Valid prediction for Augustus_model.g20474.t1
Valid prediction for Augustus_model.g20453.t1
Valid prediction for GlimmerHMM_glimmerT_30862-T1
Valid prediction for GlimmerHMM_glimmerT_30866-T1
Valid prediction for snap_scaffold_12-snap.3198-T1
Valid prediction for Augustus_model.g20478.t1
Valid prediction for GlimmerHMM_glimmerT_30849-T1
Valid prediction for GlimmerHMM_glimmerT_30872-T1
Valid prediction for Augustus_model.g20463.t1
Valid prediction for Augustus_model.g20477.t1
Couldn't classify 42690, 43121
Sorry, prediction pasa_asmbl_9136.p1 fails validation.
(ATG)	 CC	42690-43121	AT	GCA
Valid prediction for GlimmerHMM_glimmerT_30855-T1
Valid prediction for snap_scaffold_12-snap.3195-T1
Valid prediction for snap_scaffold_12-snap.3196-T1
Valid prediction for GlimmerHMM_glimmerT_30864-T1
Valid prediction for Augustus_model.g20462.t1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for Augustus_model.g20459.t1
Valid prediction for GlimmerHMM_glimmerT_30871-T1
Valid prediction for snap_scaffold_12-snap.3204-T1
Valid prediction for snap_scaffold_12-snap.3218-T1
Valid prediction for GlimmerHMM_glimmerT_30874-T1
Valid prediction for snap_scaffold_12-snap.3208-T1
Valid prediction for snap_scaffold_12-snap.3199-T1
Valid prediction for snap_scaffold_12-snap.3212-T1
Valid prediction for snap_scaffold_12-snap.3193-T1
Sorry, intron length (3) is less than minimum required (10)
Valid prediction for GlimmerHMM_glimmerT_30868-T1
Valid prediction for Augustus_model.g20468.t1
Valid prediction for Augustus_model.g20473.t1
Valid prediction for snap_scaffold_12-snap.3205-T1
Valid prediction for GlimmerHMM_glimmerT_30848-T1
Valid prediction for GlimmerHMM_glimmerT_30859-T1
Valid prediction for GlimmerHMM_glimmerT_30878-T1
Valid prediction for snap_scaffold_12-snap.3219-T1
Valid prediction for snap_scaffold_12-snap.3202-T1
Valid prediction for Augustus_model.g20472.t1
Valid prediction for GlimmerHMM_glimmerT_30869-T1
Valid prediction for snap_scaffold_12-snap.3214-T1
Valid prediction for snap_scaffold_12-snap.3216-T1
Valid prediction for CodingQuarry_transcript_10530-T1
Valid prediction for pasa_asmbl_9143.p1
Valid prediction for HiQ_model.g20460.t1
Valid prediction for Augustus_model.g20476.t1
Valid prediction for snap_scaffold_12-snap.3221-T1
Valid prediction for GlimmerHMM_glimmerT_30852-T1
Valid prediction for snap_scaffold_12-snap.3211-T1
Valid prediction for GlimmerHMM_glimmerT_30856-T1
Valid prediction for GlimmerHMM_glimmerT_30865-T1
Valid prediction for Augustus_model.g20451.t1
Valid prediction for Augustus_model.g20465.t1
Valid prediction for GlimmerHMM_glimmerT_30863-T1
Valid prediction for Augustus_model.g20471.t1
Valid prediction for Augustus_model.g20469.t1
Valid prediction for snap_scaffold_12-snap.3226-T1
Valid prediction for snap_scaffold_12-snap.3217-T1
Valid prediction for Augustus_model.g20479.t1
Valid prediction for snap_scaffold_12-snap.3213-T1
Valid prediction for Augustus_model.g20457.t1
Valid prediction for Augustus_model.g20454.t1
Valid prediction for GlimmerHMM_glimmerT_30860-T1
Valid prediction for snap_scaffold_12-snap.3209-T1
Valid prediction for Augustus_model.g20458.t1
Valid prediction for snap_scaffold_12-snap.3210-T1
Valid prediction for GlimmerHMM_glimmerT_30854-T1
Valid prediction for Augustus_model.g20467.t1
Valid prediction for Augustus_model.g20461.t1
Valid prediction for GlimmerHMM_glimmerT_30857-T1
Valid prediction for GlimmerHMM_glimmerT_30875-T1
Valid prediction for snap_scaffold_12-snap.3201-T1
Valid prediction for snap_scaffold_12-snap.3203-T1
Valid prediction for Augustus_model.g20456.t1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 236044
-exon list size: 268


building trellis

0.4    
0.7    
1.1    
1.5    
1.9    
2.2    
2.6    
3.0    
3.3    
3.7    
4.1    
4.4    
4.8    
5.2    
5.6    
5.9    
6.3    
6.7    
7.0    
7.4    
7.8    
8.1    
8.5    
8.9    
9.3    
9.6    
10.0    
10.4    
10.7    
11.1    
11.5    
11.9    
12.2    
12.6    
13.0    
13.3    
13.7    
14.1    
14.4    
14.8    
15.2    
15.6    
15.9    
16.3    
16.7    
17.0    
17.4    
17.8    
18.1    
18.5    
18.9    
19.3    
19.6    
20.0    
20.4    
20.7    
21.1    
21.5    
21.9    
22.2    
22.6    
23.0    
23.3    
23.7    
24.1    
24.4    
24.8    
25.2    
25.6    
25.9    
26.3    
26.7    
27.0    
27.4    
27.8    
28.1    
28.5    
28.9    
29.3    
29.6    
30.0    
30.4    
30.7    
31.1    
31.5    
31.9    
32.2    
32.6    
33.0    
33.3    
33.7    
34.1    
34.4    
34.8    
35.2    
35.6    
35.9    
36.3    
36.7    
37.0    
37.4    
37.8    
38.1    
38.5    
38.9    
39.3    
39.6    
40.0    
40.4    
40.7    
41.1    
41.5    
41.9    
42.2    
42.6    
43.0    
43.3    
43.7    
44.1    
44.4    
44.8    
45.2    
45.6    
45.9    
46.3    
46.7    
47.0    
47.4    
47.8    
48.1    
48.5    
48.9    
49.3    
49.6    
50.0    
50.4    
50.7    
51.1    
51.5    
51.9    
52.2    
52.6    
53.0    
53.3    
53.7    
54.1    
54.4    
54.8    
55.2    
55.6    
55.9    
56.3    
56.7    
57.0    
57.4    
57.8    
58.1    
58.5    
58.9    
59.3    
59.6    
60.0    
60.4    
60.7    
61.1    
61.5    
61.9    
62.2    
62.6    
63.0    
63.3    
63.7    
64.1    
64.4    
64.8    
65.2    
65.6    
65.9    
66.3    
66.7    
67.0    
67.4    
67.8    
68.1    
68.5    
68.9    
69.3    
69.6    
70.0    
70.4    
70.7    
71.1    
71.5    
71.9    
72.2    
72.6    
73.0    
73.3    
73.7    
74.1    
74.4    
74.8    
75.2    
75.6    
75.9    
76.3    
76.7    
77.0    
77.4    
77.8    
78.1    
78.5    
78.9    
79.3    
79.6    
80.0    
80.4    
80.7    
81.1    
81.5    
81.9    
82.2    
82.6    
83.0    
83.3    
83.7    
84.1    
84.4    
84.8    
85.2    
85.6    
85.9    
86.3    
86.7    
87.0    
87.4    
87.8    
88.1    
88.5    
88.9    
89.3    
89.6    
90.0    
90.4    
90.7    
91.1    
91.5    
91.9    
92.2    
92.6    
93.0    
93.3    
93.7    
94.1    
94.4    
94.8    
95.2    
95.6    
95.9    
96.3    
96.7    
97.0    
97.4    
97.8    
98.1    
98.5    
98.9    
99.3    
99.6    
-found 37 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 35 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 1 - 15940
-exon list size: 4


building trellis

16.7    
33.3    
50.0    
66.7    
83.3    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 1 - 15464
-exon list size: 3


building trellis

20.0    
40.0    
60.0    
80.0    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 1 - 10253
-exon list size: 2


building trellis

25.0    
50.0    
75.0    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support