-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_12/scaffold_12_15900807-16069480

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_30747-T1
Valid prediction for GlimmerHMM_glimmerT_30758-T1
Valid prediction for snap_scaffold_12-snap.3063-T1
Valid prediction for GlimmerHMM_glimmerT_30741-T1
Sorry, intron length (3) is less than minimum required (10)
Valid prediction for Augustus_model.g20352.t1
Valid prediction for snap_scaffold_12-snap.3075-T1
Valid prediction for GlimmerHMM_glimmerT_30748-T1
Valid prediction for Augustus_model.g20348.t1
Valid prediction for Augustus_model.g20351.t1
Valid prediction for snap_scaffold_12-snap.3060-T1
Valid prediction for snap_scaffold_12-snap.3061-T1
Valid prediction for snap_scaffold_12-snap.3067-T1
Valid prediction for snap_scaffold_12-snap.3055-T1
Sorry, intron length (9) is less than minimum required (10)
Valid prediction for Augustus_model.g20334.t1
Valid prediction for Augustus_model.g20335.t1
Valid prediction for GlimmerHMM_glimmerT_30756-T1
Valid prediction for snap_scaffold_12-snap.3066-T1
Valid prediction for Augustus_model.g20355.t1
Valid prediction for snap_scaffold_12-snap.3059-T1
Valid prediction for snap_scaffold_12-snap.3054-T1
Valid prediction for Augustus_model.g20342.t1
Valid prediction for Augustus_model.g20344.t1
Valid prediction for Augustus_model.g20341.t1
Valid prediction for GlimmerHMM_glimmerT_30746-T1
Valid prediction for GlimmerHMM_glimmerT_30749-T1
Valid prediction for GlimmerHMM_glimmerT_30759-T1
Valid prediction for GlimmerHMM_glimmerT_30745-T1
Valid prediction for GlimmerHMM_glimmerT_30755-T1
Valid prediction for GlimmerHMM_glimmerT_30742-T1
Valid prediction for snap_scaffold_12-snap.3058-T1
Valid prediction for Augustus_model.g20346.t1
Valid prediction for GlimmerHMM_glimmerT_30743-T1
Valid prediction for Augustus_model.g20345.t1
Valid prediction for snap_scaffold_12-snap.3046-T1
Valid prediction for snap_scaffold_12-snap.3070-T1
Valid prediction for GlimmerHMM_glimmerT_30752-T1
Valid prediction for GlimmerHMM_glimmerT_30757-T1
Valid prediction for snap_scaffold_12-snap.3056-T1
Valid prediction for snap_scaffold_12-snap.3045-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_30737-T1
Valid prediction for snap_scaffold_12-snap.3062-T1
Valid prediction for Augustus_model.g20349.t1
Valid prediction for snap_scaffold_12-snap.3051-T1
Valid prediction for GlimmerHMM_glimmerT_30744-T1
Valid prediction for snap_scaffold_12-snap.3047-T1
Valid prediction for GlimmerHMM_glimmerT_30751-T1
Valid prediction for snap_scaffold_12-snap.3052-T1
Valid prediction for snap_scaffold_12-snap.3068-T1
Valid prediction for Augustus_model.g20340.t1
Valid prediction for GlimmerHMM_glimmerT_30733-T1
Valid prediction for snap_scaffold_12-snap.3065-T1
Valid prediction for snap_scaffold_12-snap.3053-T1
Valid prediction for GlimmerHMM_glimmerT_30736-T1
Valid prediction for Augustus_model.g20354.t1
Valid prediction for GlimmerHMM_glimmerT_30738-T1
Valid prediction for Augustus_model.g20337.t1
Valid prediction for GlimmerHMM_glimmerT_30740-T1
Valid prediction for snap_scaffold_12-snap.3071-T1
Valid prediction for Augustus_model.g20347.t1
Valid prediction for snap_scaffold_12-snap.3050-T1
Valid prediction for GlimmerHMM_glimmerT_30750-T1
Valid prediction for snap_scaffold_12-snap.3064-T1
Valid prediction for Augustus_model.g20353.t1
Valid prediction for snap_scaffold_12-snap.3048-T1
Valid prediction for Augustus_model.g20339.t1
Valid prediction for GlimmerHMM_glimmerT_30754-T1
Valid prediction for snap_scaffold_12-snap.3057-T1
Valid prediction for Augustus_model.g20343.t1
Valid prediction for snap_scaffold_12-snap.3072-T1
Valid prediction for GlimmerHMM_glimmerT_30753-T1
Valid prediction for Augustus_model.g20350.t1
Valid prediction for snap_scaffold_12-snap.3044-T1
Valid prediction for snap_scaffold_12-snap.3074-T1
Valid prediction for snap_scaffold_12-snap.3069-T1
Valid prediction for GlimmerHMM_glimmerT_30735-T1
Valid prediction for Augustus_model.g20336.t1
Valid prediction for GlimmerHMM_glimmerT_30734-T1
Valid prediction for Augustus_model.g20338.t1
Valid prediction for snap_scaffold_12-snap.3049-T1
Valid prediction for GlimmerHMM_glimmerT_30739-T1
Sorry, intron length (4) is less than minimum required (10)
Valid prediction for snap_scaffold_12-snap.3073-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 8662, rend_intergenic: 2843  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 164785, rend_intergenic: 162341  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 168674
-exon list size: 238


building trellis

0.4    
0.8    
1.2    
1.7    
2.1    
2.5    
2.9    
3.3    
3.8    
4.2    
4.6    
5.0    
5.4    
5.8    
6.2    
6.7    
7.1    
7.5    
7.9    
8.3    
8.8    
9.2    
9.6    
10.0    
10.4    
10.8    
11.2    
11.7    
12.1    
12.5    
12.9    
13.3    
13.8    
14.2    
14.6    
15.0    
15.4    
15.8    
16.2    
16.7    
17.1    
17.5    
17.9    
18.3    
18.8    
19.2    
19.6    
20.0    
20.4    
20.8    
21.2    
21.7    
22.1    
22.5    
22.9    
23.3    
23.8    
24.2    
24.6    
25.0    
25.4    
25.8    
26.2    
26.7    
27.1    
27.5    
27.9    
28.3    
28.7    
29.2    
29.6    
30.0    
30.4    
30.8    
31.2    
31.7    
32.1    
32.5    
32.9    
33.3    
33.8    
34.2    
34.6    
35.0    
35.4    
35.8    
36.2    
36.7    
37.1    
37.5    
37.9    
38.3    
38.8    
39.2    
39.6    
40.0    
40.4    
40.8    
41.2    
41.7    
42.1    
42.5    
42.9    
43.3    
43.8    
44.2    
44.6    
45.0    
45.4    
45.8    
46.2    
46.7    
47.1    
47.5    
47.9    
48.3    
48.8    
49.2    
49.6    
50.0    
50.4    
50.8    
51.2    
51.7    
52.1    
52.5    
52.9    
53.3    
53.8    
54.2    
54.6    
55.0    
55.4    
55.8    
56.2    
56.7    
57.1    
57.5    
57.9    
58.3    
58.8    
59.2    
59.6    
60.0    
60.4    
60.8    
61.3    
61.7    
62.1    
62.5    
62.9    
63.3    
63.7    
64.2    
64.6    
65.0    
65.4    
65.8    
66.2    
66.7    
67.1    
67.5    
67.9    
68.3    
68.8    
69.2    
69.6    
70.0    
70.4    
70.8    
71.2    
71.7    
72.1    
72.5    
72.9    
73.3    
73.8    
74.2    
74.6    
75.0    
75.4    
75.8    
76.2    
76.7    
77.1    
77.5    
77.9    
78.3    
78.8    
79.2    
79.6    
80.0    
80.4    
80.8    
81.2    
81.7    
82.1    
82.5    
82.9    
83.3    
83.8    
84.2    
84.6    
85.0    
85.4    
85.8    
86.2    
86.7    
87.1    
87.5    
87.9    
88.3    
88.8    
89.2    
89.6    
90.0    
90.4    
90.8    
91.2    
91.7    
92.1    
92.5    
92.9    
93.3    
93.8    
94.2    
94.6    
95.0    
95.4    
95.8    
96.2    
96.7    
97.1    
97.5    
97.9    
98.3    
98.8    
99.2    
99.6    
-found 30 predictions from path traversal
Error with prediction: snap lend_intergenic: 8662, rend_intergenic: 2843  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 164785, rend_intergenic: 162341  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 26 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 156787 - 168674
-exon list size: 12


building trellis

7.1    
14.3    
21.4    
28.6    
35.7    
42.9    
50.0    
57.1    
64.3    
71.4    
78.6    
85.7    
92.9    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support