-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_12/scaffold_12_14785115-14958209

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 167677, 167741
Sorry, prediction pasa_asmbl_8100.p1 fails validation.
(GGC)	 GA	167677-167741	GT	TGG
(GTC)	 AG	168011-168193	GT	AGG
(TTC)	 AG	168523-168616	GT	AGG
(GTG)	 AG	169446-169574	GT	TGG
(GGC)	 AG	169954-170000	GT	AAG
(CGT)	 AG	170093-170239	GT	AGG
(GAA)	 AG	170431-170631	GT	AGG
(CCA)	 AG	170981-171179	GT	AGG
(GTG)	 AG	171261-171365	GT	AGG
(TTG)	 AG	171479-171562	GT	TGG
(TTG)	 AG	171683-171874	AG	AGA
-recovered pasa_asmbl_8100.p1, terminal, 171683, 171874
-recovered pasa_asmbl_8100.p1, internal, 168011, 168193
-recovered pasa_asmbl_8100.p1, internal, 168523, 168616
-recovered pasa_asmbl_8100.p1, internal, 169446, 169574
-recovered pasa_asmbl_8100.p1, internal, 169954, 170000
-recovered pasa_asmbl_8100.p1, internal, 170093, 170239
-recovered pasa_asmbl_8100.p1, internal, 170431, 170631
-recovered pasa_asmbl_8100.p1, internal, 170981, 171179
-recovered pasa_asmbl_8100.p1, internal, 171261, 171365
-recovered pasa_asmbl_8100.p1, internal, 171479, 171562
Valid prediction for GlimmerHMM_glimmerT_30571-T1
Valid prediction for Augustus_model.g20228.t1
Valid prediction for snap_scaffold_12-snap.2798-T1
Valid prediction for snap_scaffold_12-snap.2831-T1
Valid prediction for snap_scaffold_12-snap.2802-T1
Valid prediction for snap_scaffold_12-snap.2812-T1
Valid prediction for CodingQuarry_transcript_10472-T1
Valid prediction for GlimmerHMM_glimmerT_30565-T1
Valid prediction for snap_scaffold_12-snap.2819-T1
Valid prediction for snap_scaffold_12-snap.2804-T1
Valid prediction for snap_scaffold_12-snap.2808-T1
Valid prediction for GlimmerHMM_glimmerT_30570-T1
Valid prediction for GlimmerHMM_glimmerT_30564-T1
Valid prediction for Augustus_model.g20226.t1
Valid prediction for snap_scaffold_12-snap.2823-T1
Valid prediction for CodingQuarry_transcript_10469-T1
Valid prediction for GlimmerHMM_glimmerT_30568-T1
Valid prediction for GlimmerHMM_glimmerT_30573-T1
Valid prediction for HiQ_model.g20220.t1
Valid prediction for snap_scaffold_12-snap.2825-T1
Valid prediction for GlimmerHMM_glimmerT_30555-T1
Valid prediction for snap_scaffold_12-snap.2813-T1
Valid prediction for snap_scaffold_12-snap.2828-T1
Valid prediction for pasa_asmbl_8093.p1
Valid prediction for snap_scaffold_12-snap.2803-T1
Valid prediction for Augustus_model.g20230.t1
Valid prediction for Augustus_model.g20222.t1
Valid prediction for GlimmerHMM_glimmerT_30580-T1
Valid prediction for GlimmerHMM_glimmerT_30583-T1
Valid prediction for snap_scaffold_12-snap.2815-T1
Valid prediction for GlimmerHMM_glimmerT_30576-T1
Valid prediction for snap_scaffold_12-snap.2795-T1
Valid prediction for snap_scaffold_12-snap.2797-T1
Valid prediction for GlimmerHMM_glimmerT_30563-T1
Valid prediction for Augustus_model.g20224.t1
Valid prediction for snap_scaffold_12-snap.2817-T1
Valid prediction for snap_scaffold_12-snap.2833-T1
Valid prediction for GlimmerHMM_glimmerT_30556-T1
Valid prediction for snap_scaffold_12-snap.2821-T1
Valid prediction for Augustus_model.g20215.t1
Valid prediction for GlimmerHMM_glimmerT_30578-T1
Valid prediction for snap_scaffold_12-snap.2806-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_12-snap.2820-T1
Valid prediction for Augustus_model.g20217.t1
Valid prediction for snap_scaffold_12-snap.2809-T1
Valid prediction for snap_scaffold_12-snap.2822-T1
Valid prediction for GlimmerHMM_glimmerT_30559-T1
Valid prediction for Augustus_model.g20225.t1
Valid prediction for GlimmerHMM_glimmerT_30581-T1
Valid prediction for snap_scaffold_12-snap.2811-T1
Valid prediction for CodingQuarry_transcript_10468-T1
Valid prediction for HiQ_model.g20219.t1
Valid prediction for GlimmerHMM_glimmerT_30575-T1
Valid prediction for snap_scaffold_12-snap.2799-T1
Valid prediction for HiQ_model.g20223.t1
Valid prediction for GlimmerHMM_glimmerT_30569-T1
Valid prediction for GlimmerHMM_glimmerT_30562-T1
Valid prediction for snap_scaffold_12-snap.2805-T1
Valid prediction for snap_scaffold_12-snap.2826-T1
Valid prediction for GlimmerHMM_glimmerT_30579-T1
Valid prediction for snap_scaffold_12-snap.2829-T1
Valid prediction for snap_scaffold_12-snap.2824-T1
Valid prediction for Augustus_model.g20227.t1
Couldn't classify 44173, 44769
Sorry, prediction pasa_asmbl_9015.p1 fails validation.
(CTG)	 CC	44173-44769	AC	CCA
Valid prediction for pasa_asmbl_9013.p1
Valid prediction for GlimmerHMM_glimmerT_30574-T1
Valid prediction for GlimmerHMM_glimmerT_30566-T1
Valid prediction for Augustus_model.g20218.t1
Valid prediction for snap_scaffold_12-snap.2816-T1
Valid prediction for GlimmerHMM_glimmerT_30560-T1
Valid prediction for snap_scaffold_12-snap.2834-T1
Valid prediction for GlimmerHMM_glimmerT_30572-T1
Valid prediction for GlimmerHMM_glimmerT_30561-T1
Valid prediction for snap_scaffold_12-snap.2801-T1
Couldn't classify 45277, 45693
Sorry, prediction pasa_asmbl_9014.p1 fails validation.
(GCG)	 GG	45277-45693	CC	GAC
Valid prediction for GlimmerHMM_glimmerT_30558-T1
Valid prediction for GlimmerHMM_glimmerT_30567-T1
Valid prediction for snap_scaffold_12-snap.2827-T1
Valid prediction for GlimmerHMM_glimmerT_30582-T1
Valid prediction for snap_scaffold_12-snap.2830-T1
Valid prediction for snap_scaffold_12-snap.2807-T1
Valid prediction for pasa_asmbl_9194.p1
Valid prediction for Augustus_model.g20221.t1
Valid prediction for CodingQuarry_transcript_10470-T1
Valid prediction for snap_scaffold_12-snap.2832-T1
Valid prediction for GlimmerHMM_glimmerT_30577-T1
Valid prediction for Augustus_model.g20216.t1
Valid prediction for HiQ_model.g20229.t1
Valid prediction for CodingQuarry_transcript_10473-T1
Valid prediction for snap_scaffold_12-snap.2794-T1
Valid prediction for snap_scaffold_12-snap.2796-T1
Valid prediction for pasa_asmbl_9016.p1
Valid prediction for snap_scaffold_12-snap.2800-T1
Valid prediction for snap_scaffold_12-snap.2818-T1
Valid prediction for GlimmerHMM_glimmerT_30557-T1
Valid prediction for GlimmerHMM_glimmerT_30554-T1
Valid prediction for snap_scaffold_12-snap.2814-T1
Sorry, intron length (6) is less than minimum required (10)
Valid prediction for snap_scaffold_12-snap.2810-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 7636, rend_intergenic: 3029  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 15868, rend_intergenic: 14584  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 31899, rend_intergenic: 22483  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 44786, rend_intergenic: 37841  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 59802, rend_intergenic: 58640  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 72532, rend_intergenic: 63392  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 90551, rend_intergenic: 83856  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 117844, rend_intergenic: 112783  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 124757, rend_intergenic: 120333  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 137381, rend_intergenic: 131551  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 143298, rend_intergenic: 137433  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 148722, rend_intergenic: 144768  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 171874, rend_intergenic: 166741  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 173095
-exon list size: 354


building trellis

0.3    
0.6    
0.8    
1.1    
1.4    
1.7    
2.0    
2.2    
2.5    
2.8    
3.1    
3.4    
3.7    
3.9    
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4.5    
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5.1    
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5.6    
5.9    
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6.5    
6.7    
7.0    
7.3    
7.6    
7.9    
8.1    
8.4    
8.7    
9.0    
9.3    
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9.8    
10.1    
10.4    
10.7    
11.0    
11.2    
11.5    
11.8    
12.1    
12.4    
12.6    
12.9    
13.2    
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13.8    
14.0    
14.3    
14.6    
14.9    
15.2    
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15.7    
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16.6    
16.9    
17.1    
17.4    
17.7    
18.0    
18.3    
18.5    
18.8    
19.1    
19.4    
19.7    
19.9    
20.2    
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22.5    
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23.0    
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23.6    
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25.8    
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26.4    
26.7    
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27.2    
27.5    
27.8    
28.1    
28.4    
28.7    
28.9    
29.2    
29.5    
29.8    
30.1    
30.3    
30.6    
30.9    
31.2    
31.5    
31.7    
32.0    
32.3    
32.6    
32.9    
33.1    
33.4    
33.7    
34.0    
34.3    
34.6    
34.8    
35.1    
35.4    
35.7    
36.0    
36.2    
36.5    
36.8    
37.1    
37.4    
37.6    
37.9    
38.2    
38.5    
38.8    
39.0    
39.3    
39.6    
39.9    
40.2    
40.4    
40.7    
41.0    
41.3    
41.6    
41.9    
42.1    
42.4    
42.7    
43.0    
43.3    
43.5    
43.8    
44.1    
44.4    
44.7    
44.9    
45.2    
45.5    
45.8    
46.1    
46.3    
46.6    
46.9    
47.2    
47.5    
47.8    
48.0    
48.3    
48.6    
48.9    
49.2    
49.4    
49.7    
50.0    
50.3    
50.6    
50.8    
51.1    
51.4    
51.7    
52.0    
52.2    
52.5    
52.8    
53.1    
53.4    
53.7    
53.9    
54.2    
54.5    
54.8    
55.1    
55.3    
55.6    
55.9    
56.2    
56.5    
56.7    
57.0    
57.3    
57.6    
57.9    
58.1    
58.4    
58.7    
59.0    
59.3    
59.6    
59.8    
60.1    
60.4    
60.7    
61.0    
61.2    
61.5    
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62.1    
62.4    
62.6    
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63.2    
63.5    
63.8    
64.0    
64.3    
64.6    
64.9    
65.2    
65.4    
65.7    
66.0    
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66.6    
66.9    
67.1    
67.4    
67.7    
68.0    
68.3    
68.5    
68.8    
69.1    
69.4    
69.7    
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71.1    
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75.6    
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78.4    
78.7    
78.9    
79.2    
79.5    
79.8    
80.1    
80.3    
80.6    
80.9    
81.2    
81.5    
81.7    
82.0    
82.3    
82.6    
82.9    
83.1    
83.4    
83.7    
84.0    
84.3    
84.6    
84.8    
85.1    
85.4    
85.7    
86.0    
86.2    
86.5    
86.8    
87.1    
87.4    
87.6    
87.9    
88.2    
88.5    
88.8    
89.0    
89.3    
89.6    
89.9    
90.2    
90.4    
90.7    
91.0    
91.3    
91.6    
91.9    
92.1    
92.4    
92.7    
93.0    
93.3    
93.5    
93.8    
94.1    
94.4    
94.7    
94.9    
95.2    
95.5    
95.8    
96.1    
96.3    
96.6    
96.9    
97.2    
97.5    
97.8    
98.0    
98.3    
98.6    
98.9    
99.2    
99.4    
99.7    
-found 29 predictions from path traversal
Error with prediction: snap lend_intergenic: 7636, rend_intergenic: 3029  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 15868, rend_intergenic: 14584  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 31899, rend_intergenic: 22483  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 44786, rend_intergenic: 37841  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 59802, rend_intergenic: 58640  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 72532, rend_intergenic: 63392  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 90551, rend_intergenic: 83856  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 117844, rend_intergenic: 112783  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 124757, rend_intergenic: 120333  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 137381, rend_intergenic: 131551  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 143298, rend_intergenic: 137433  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 148722, rend_intergenic: 144768  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 171874, rend_intergenic: 166741  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 18 predictions persist after filtering for low support