-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_12/scaffold_12_1471002-1694694

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_28880-T1
Valid prediction for GlimmerHMM_glimmerT_28884-T1
Valid prediction for GlimmerHMM_glimmerT_28881-T1
Valid prediction for GlimmerHMM_glimmerT_28882-T1
Valid prediction for Augustus_model.g19062.t1
Valid prediction for GlimmerHMM_glimmerT_28864-T1
Valid prediction for GlimmerHMM_glimmerT_28869-T1
Valid prediction for Augustus_model.g19061.t1
Valid prediction for GlimmerHMM_glimmerT_28871-T1
Valid prediction for snap_scaffold_12-snap.356-T1
Valid prediction for snap_scaffold_12-snap.347-T1
Valid prediction for snap_scaffold_12-snap.352-T1
Valid prediction for GlimmerHMM_glimmerT_28866-T1
Valid prediction for GlimmerHMM_glimmerT_28877-T1
Valid prediction for snap_scaffold_12-snap.346-T1
Valid prediction for snap_scaffold_12-snap.345-T1
Valid prediction for snap_scaffold_12-snap.343-T1
Valid prediction for snap_scaffold_12-snap.342-T1
Valid prediction for snap_scaffold_12-snap.359-T1
Valid prediction for snap_scaffold_12-snap.362-T1
Valid prediction for GlimmerHMM_glimmerT_28867-T1
Valid prediction for snap_scaffold_12-snap.358-T1
Valid prediction for snap_scaffold_12-snap.350-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_12-snap.349-T1
Valid prediction for snap_scaffold_12-snap.354-T1
Valid prediction for snap_scaffold_12-snap.344-T1
Valid prediction for GlimmerHMM_glimmerT_28868-T1
Valid prediction for snap_scaffold_12-snap.340-T1
Valid prediction for snap_scaffold_12-snap.361-T1
Valid prediction for GlimmerHMM_glimmerT_28878-T1
Valid prediction for GlimmerHMM_glimmerT_28875-T1
Valid prediction for GlimmerHMM_glimmerT_28886-T1
Valid prediction for GlimmerHMM_glimmerT_28865-T1
Valid prediction for snap_scaffold_12-snap.360-T1
Valid prediction for Augustus_model.g19060.t1
Valid prediction for snap_scaffold_12-snap.339-T1
Valid prediction for GlimmerHMM_glimmerT_28870-T1
Valid prediction for snap_scaffold_12-snap.363-T1
Valid prediction for snap_scaffold_12-snap.351-T1
Valid prediction for GlimmerHMM_glimmerT_28872-T1
Valid prediction for GlimmerHMM_glimmerT_28876-T1
Valid prediction for snap_scaffold_12-snap.341-T1
Valid prediction for GlimmerHMM_glimmerT_28874-T1
Valid prediction for GlimmerHMM_glimmerT_28883-T1
Valid prediction for GlimmerHMM_glimmerT_28879-T1
Valid prediction for snap_scaffold_12-snap.357-T1
Valid prediction for snap_scaffold_12-snap.338-T1
Valid prediction for GlimmerHMM_glimmerT_28885-T1
Valid prediction for Augustus_model.g19059.t1
Valid prediction for GlimmerHMM_glimmerT_28862-T1
Valid prediction for snap_scaffold_12-snap.353-T1
Valid prediction for GlimmerHMM_glimmerT_28863-T1
Valid prediction for GlimmerHMM_glimmerT_28873-T1
Valid prediction for snap_scaffold_12-snap.355-T1
Valid prediction for snap_scaffold_12-snap.348-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 57899, rend_intergenic: 55399  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 77661, rend_intergenic: 77394  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 142407, rend_intergenic: 139137  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 157413, rend_intergenic: 155245  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 179558, rend_intergenic: 168228  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 223693
-exon list size: 155


building trellis

0.6    
1.3    
1.9    
2.5    
3.2    
3.8    
4.5    
5.1    
5.7    
6.4    
7.0    
7.6    
8.3    
8.9    
9.6    
10.2    
10.8    
11.5    
12.1    
12.7    
13.4    
14.0    
14.6    
15.3    
15.9    
16.6    
17.2    
17.8    
18.5    
19.1    
19.7    
20.4    
21.0    
21.7    
22.3    
22.9    
23.6    
24.2    
24.8    
25.5    
26.1    
26.8    
27.4    
28.0    
28.7    
29.3    
29.9    
30.6    
31.2    
31.8    
32.5    
33.1    
33.8    
34.4    
35.0    
35.7    
36.3    
36.9    
37.6    
38.2    
38.9    
39.5    
40.1    
40.8    
41.4    
42.0    
42.7    
43.3    
43.9    
44.6    
45.2    
45.9    
46.5    
47.1    
47.8    
48.4    
49.0    
49.7    
50.3    
51.0    
51.6    
52.2    
52.9    
53.5    
54.1    
54.8    
55.4    
56.1    
56.7    
57.3    
58.0    
58.6    
59.2    
59.9    
60.5    
61.1    
61.8    
62.4    
63.1    
63.7    
64.3    
65.0    
65.6    
66.2    
66.9    
67.5    
68.2    
68.8    
69.4    
70.1    
70.7    
71.3    
72.0    
72.6    
73.2    
73.9    
74.5    
75.2    
75.8    
76.4    
77.1    
77.7    
78.3    
79.0    
79.6    
80.3    
80.9    
81.5    
82.2    
82.8    
83.4    
84.1    
84.7    
85.4    
86.0    
86.6    
87.3    
87.9    
88.5    
89.2    
89.8    
90.4    
91.1    
91.7    
92.4    
93.0    
93.6    
94.3    
94.9    
95.5    
96.2    
96.8    
97.5    
98.1    
98.7    
99.4    
-found 18 predictions from path traversal
Error with prediction: snap lend_intergenic: 57899, rend_intergenic: 55399  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 77661, rend_intergenic: 77394  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 142407, rend_intergenic: 139137  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 157413, rend_intergenic: 155245  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 179558, rend_intergenic: 168228  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 13 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 212667 - 223693
-exon list size: 2


building trellis

25.0    
50.0    
75.0    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support