-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_12/scaffold_12_14622319-14787959

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_30521-T1
Valid prediction for GlimmerHMM_glimmerT_30551-T1
Valid prediction for snap_scaffold_12-snap.2760-T1
Valid prediction for snap_scaffold_12-snap.2771-T1
Valid prediction for GlimmerHMM_glimmerT_30538-T1
Valid prediction for snap_scaffold_12-snap.2769-T1
Valid prediction for Augustus_model.g20196.t1
Valid prediction for GlimmerHMM_glimmerT_30539-T1
Valid prediction for snap_scaffold_12-snap.2786-T1
Valid prediction for snap_scaffold_12-snap.2778-T1
Valid prediction for snap_scaffold_12-snap.2780-T1
Valid prediction for GlimmerHMM_glimmerT_30545-T1
Valid prediction for snap_scaffold_12-snap.2759-T1
Valid prediction for snap_scaffold_12-snap.2772-T1
Valid prediction for GlimmerHMM_glimmerT_30553-T1
Valid prediction for GlimmerHMM_glimmerT_30543-T1
Valid prediction for GlimmerHMM_glimmerT_30548-T1
Valid prediction for Augustus_model.g20210.t1
Valid prediction for snap_scaffold_12-snap.2783-T1
Valid prediction for GlimmerHMM_glimmerT_30530-T1
Valid prediction for snap_scaffold_12-snap.2784-T1
Valid prediction for Augustus_model.g20208.t1
Valid prediction for Augustus_model.g20198.t1
Valid prediction for Augustus_model.g20212.t1
Valid prediction for GlimmerHMM_glimmerT_30537-T1
Valid prediction for GlimmerHMM_glimmerT_30533-T1
Valid prediction for snap_scaffold_12-snap.2755-T1
Valid prediction for snap_scaffold_12-snap.2776-T1
Valid prediction for snap_scaffold_12-snap.2791-T1
Valid prediction for snap_scaffold_12-snap.2761-T1
Valid prediction for Augustus_model.g20207.t1
Valid prediction for snap_scaffold_12-snap.2788-T1
Valid prediction for snap_scaffold_12-snap.2782-T1
Valid prediction for snap_scaffold_12-snap.2765-T1
Valid prediction for GlimmerHMM_glimmerT_30525-T1
Valid prediction for GlimmerHMM_glimmerT_30522-T1
Valid prediction for Augustus_model.g20201.t1
Valid prediction for snap_scaffold_12-snap.2789-T1
Valid prediction for Augustus_model.g20209.t1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_12-snap.2775-T1
Valid prediction for snap_scaffold_12-snap.2758-T1
Sorry, intron length (4) is less than minimum required (10)
Valid prediction for Augustus_model.g20206.t1
Valid prediction for GlimmerHMM_glimmerT_30547-T1
Valid prediction for Augustus_model.g20200.t1
Valid prediction for snap_scaffold_12-snap.2774-T1
Valid prediction for Augustus_model.g20204.t1
Valid prediction for snap_scaffold_12-snap.2764-T1
Valid prediction for GlimmerHMM_glimmerT_30526-T1
Valid prediction for GlimmerHMM_glimmerT_30541-T1
Valid prediction for snap_scaffold_12-snap.2781-T1
Valid prediction for GlimmerHMM_glimmerT_30532-T1
Valid prediction for Augustus_model.g20203.t1
Valid prediction for GlimmerHMM_glimmerT_30549-T1
Valid prediction for snap_scaffold_12-snap.2787-T1
Valid prediction for Augustus_model.g20213.t1
Valid prediction for snap_scaffold_12-snap.2770-T1
Valid prediction for GlimmerHMM_glimmerT_30528-T1
Valid prediction for GlimmerHMM_glimmerT_30544-T1
Valid prediction for Augustus_model.g20197.t1
Valid prediction for GlimmerHMM_glimmerT_30529-T1
Valid prediction for snap_scaffold_12-snap.2763-T1
Valid prediction for snap_scaffold_12-snap.2767-T1
Valid prediction for snap_scaffold_12-snap.2793-T1
Valid prediction for Augustus_model.g20202.t1
Valid prediction for Augustus_model.g20214.t1
Valid prediction for GlimmerHMM_glimmerT_30534-T1
Valid prediction for snap_scaffold_12-snap.2766-T1
Valid prediction for snap_scaffold_12-snap.2790-T1
Valid prediction for GlimmerHMM_glimmerT_30536-T1
Valid prediction for snap_scaffold_12-snap.2792-T1
Valid prediction for snap_scaffold_12-snap.2762-T1
Sorry, intron length (7) is less than minimum required (10)
Valid prediction for Augustus_model.g20205.t1
Valid prediction for GlimmerHMM_glimmerT_30531-T1
Valid prediction for snap_scaffold_12-snap.2757-T1
Valid prediction for snap_scaffold_12-snap.2785-T1
Valid prediction for snap_scaffold_12-snap.2779-T1
Sorry, intron length (7) is less than minimum required (10)
Valid prediction for snap_scaffold_12-snap.2768-T1
Valid prediction for Augustus_model.g20199.t1
Valid prediction for snap_scaffold_12-snap.2794-T1
Valid prediction for GlimmerHMM_glimmerT_30540-T1
Valid prediction for GlimmerHMM_glimmerT_30524-T1
Valid prediction for GlimmerHMM_glimmerT_30546-T1
Valid prediction for GlimmerHMM_glimmerT_30523-T1
Valid prediction for GlimmerHMM_glimmerT_30535-T1
Valid prediction for GlimmerHMM_glimmerT_30542-T1
Valid prediction for snap_scaffold_12-snap.2773-T1
Valid prediction for GlimmerHMM_glimmerT_30552-T1
Valid prediction for Augustus_model.g20211.t1
Valid prediction for snap_scaffold_12-snap.2777-T1
Valid prediction for GlimmerHMM_glimmerT_30527-T1
Valid prediction for snap_scaffold_12-snap.2756-T1
Valid prediction for GlimmerHMM_glimmerT_30550-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 15570, rend_intergenic: 13060  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 29525, rend_intergenic: 16505  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 43287, rend_intergenic: 37841  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 58942, rend_intergenic: 48289  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 60071, rend_intergenic: 59194  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 73537, rend_intergenic: 66876  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 76676, rend_intergenic: 73856  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 83947, rend_intergenic: 79846  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 90476, rend_intergenic: 88041  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 103575, rend_intergenic: 102170  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 106497, rend_intergenic: 104456  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 116558, rend_intergenic: 110093  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 122755, rend_intergenic: 119964  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 142602, rend_intergenic: 139947  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 146852, rend_intergenic: 143030  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 165641
-exon list size: 330


building trellis

0.3    
0.6    
0.9    
1.2    
1.5    
1.8    
2.1    
2.4    
2.7    
3.0    
3.3    
3.6    
3.9    
4.2    
4.5    
4.8    
5.1    
5.4    
5.7    
6.0    
6.3    
6.6    
6.9    
7.2    
7.5    
7.8    
8.1    
8.4    
8.7    
9.0    
9.3    
9.6    
9.9    
10.2    
10.5    
10.8    
11.1    
11.4    
11.7    
12.0    
12.3    
12.7    
13.0    
13.3    
13.6    
13.9    
14.2    
14.5    
14.8    
15.1    
15.4    
15.7    
16.0    
16.3    
16.6    
16.9    
17.2    
17.5    
17.8    
18.1    
18.4    
18.7    
19.0    
19.3    
19.6    
19.9    
20.2    
20.5    
20.8    
21.1    
21.4    
21.7    
22.0    
22.3    
22.6    
22.9    
23.2    
23.5    
23.8    
24.1    
24.4    
24.7    
25.0    
25.3    
25.6    
25.9    
26.2    
26.5    
26.8    
27.1    
27.4    
27.7    
28.0    
28.3    
28.6    
28.9    
29.2    
29.5    
29.8    
30.1    
30.4    
30.7    
31.0    
31.3    
31.6    
31.9    
32.2    
32.5    
32.8    
33.1    
33.4    
33.7    
34.0    
34.3    
34.6    
34.9    
35.2    
35.5    
35.8    
36.1    
36.4    
36.7    
37.0    
37.3    
37.7    
38.0    
38.3    
38.6    
38.9    
39.2    
39.5    
39.8    
40.1    
40.4    
40.7    
41.0    
41.3    
41.6    
41.9    
42.2    
42.5    
42.8    
43.1    
43.4    
43.7    
44.0    
44.3    
44.6    
44.9    
45.2    
45.5    
45.8    
46.1    
46.4    
46.7    
47.0    
47.3    
47.6    
47.9    
48.2    
48.5    
48.8    
49.1    
49.4    
49.7    
50.0    
50.3    
50.6    
50.9    
51.2    
51.5    
51.8    
52.1    
52.4    
52.7    
53.0    
53.3    
53.6    
53.9    
54.2    
54.5    
54.8    
55.1    
55.4    
55.7    
56.0    
56.3    
56.6    
56.9    
57.2    
57.5    
57.8    
58.1    
58.4    
58.7    
59.0    
59.3    
59.6    
59.9    
60.2    
60.5    
60.8    
61.1    
61.4    
61.7    
62.0    
62.3    
62.7    
63.0    
63.3    
63.6    
63.9    
64.2    
64.5    
64.8    
65.1    
65.4    
65.7    
66.0    
66.3    
66.6    
66.9    
67.2    
67.5    
67.8    
68.1    
68.4    
68.7    
69.0    
69.3    
69.6    
69.9    
70.2    
70.5    
70.8    
71.1    
71.4    
71.7    
72.0    
72.3    
72.6    
72.9    
73.2    
73.5    
73.8    
74.1    
74.4    
74.7    
75.0    
75.3    
75.6    
75.9    
76.2    
76.5    
76.8    
77.1    
77.4    
77.7    
78.0    
78.3    
78.6    
78.9    
79.2    
79.5    
79.8    
80.1    
80.4    
80.7    
81.0    
81.3    
81.6    
81.9    
82.2    
82.5    
82.8    
83.1    
83.4    
83.7    
84.0    
84.3    
84.6    
84.9    
85.2    
85.5    
85.8    
86.1    
86.4    
86.7    
87.0    
87.3    
87.7    
88.0    
88.3    
88.6    
88.9    
89.2    
89.5    
89.8    
90.1    
90.4    
90.7    
91.0    
91.3    
91.6    
91.9    
92.2    
92.5    
92.8    
93.1    
93.4    
93.7    
94.0    
94.3    
94.6    
94.9    
95.2    
95.5    
95.8    
96.1    
96.4    
96.7    
97.0    
97.3    
97.6    
97.9    
98.2    
98.5    
98.8    
99.1    
99.4    
99.7    
-found 33 predictions from path traversal
Error with prediction: snap lend_intergenic: 15570, rend_intergenic: 13060  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 29525, rend_intergenic: 16505  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 43287, rend_intergenic: 37841  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 58942, rend_intergenic: 48289  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 60071, rend_intergenic: 59194  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 73537, rend_intergenic: 66876  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 76676, rend_intergenic: 73856  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 83947, rend_intergenic: 79846  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 90476, rend_intergenic: 88041  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 103575, rend_intergenic: 102170  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 106497, rend_intergenic: 104456  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 116558, rend_intergenic: 110093  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 122755, rend_intergenic: 119964  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 142602, rend_intergenic: 139947  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 146852, rend_intergenic: 143030  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 15 predictions persist after filtering for low support