-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_12/scaffold_12_14476687-14625143

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for Augustus_model.g20191.t1
Valid prediction for snap_scaffold_12-snap.2752-T1
Valid prediction for snap_scaffold_12-snap.2722-T1
Valid prediction for Augustus_model.g20185.t1
Valid prediction for GlimmerHMM_glimmerT_30514-T1
Valid prediction for GlimmerHMM_glimmerT_30510-T1
Valid prediction for snap_scaffold_12-snap.2734-T1
Valid prediction for Augustus_model.g20192.t1
Valid prediction for snap_scaffold_12-snap.2730-T1
Valid prediction for snap_scaffold_12-snap.2750-T1
Valid prediction for snap_scaffold_12-snap.2731-T1
Valid prediction for GlimmerHMM_glimmerT_30507-T1
Valid prediction for snap_scaffold_12-snap.2748-T1
Valid prediction for GlimmerHMM_glimmerT_30519-T1
Valid prediction for GlimmerHMM_glimmerT_30517-T1
Valid prediction for GlimmerHMM_glimmerT_30502-T1
Valid prediction for GlimmerHMM_glimmerT_30520-T1
Valid prediction for snap_scaffold_12-snap.2747-T1
Valid prediction for Augustus_model.g20187.t1
Valid prediction for snap_scaffold_12-snap.2720-T1
Valid prediction for snap_scaffold_12-snap.2716-T1
Valid prediction for snap_scaffold_12-snap.2723-T1
Valid prediction for GlimmerHMM_glimmerT_30499-T1
Valid prediction for snap_scaffold_12-snap.2737-T1
Valid prediction for GlimmerHMM_glimmerT_30503-T1
Valid prediction for snap_scaffold_12-snap.2717-T1
Valid prediction for GlimmerHMM_glimmerT_30509-T1
Valid prediction for snap_scaffold_12-snap.2726-T1
Valid prediction for snap_scaffold_12-snap.2742-T1
Valid prediction for GlimmerHMM_glimmerT_30512-T1
Valid prediction for snap_scaffold_12-snap.2741-T1
Valid prediction for snap_scaffold_12-snap.2746-T1
Valid prediction for Augustus_model.g20194.t1
Valid prediction for snap_scaffold_12-snap.2733-T1
Valid prediction for GlimmerHMM_glimmerT_30505-T1
Valid prediction for GlimmerHMM_glimmerT_30518-T1
Valid prediction for Augustus_model.g20188.t1
Valid prediction for snap_scaffold_12-snap.2732-T1
Valid prediction for GlimmerHMM_glimmerT_30506-T1
Valid prediction for GlimmerHMM_glimmerT_30513-T1
Valid prediction for snap_scaffold_12-snap.2743-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_12-snap.2727-T1
Valid prediction for snap_scaffold_12-snap.2719-T1
Valid prediction for GlimmerHMM_glimmerT_30500-T1
Valid prediction for snap_scaffold_12-snap.2725-T1
Valid prediction for snap_scaffold_12-snap.2724-T1
Valid prediction for snap_scaffold_12-snap.2736-T1
Valid prediction for Augustus_model.g20189.t1
Valid prediction for GlimmerHMM_glimmerT_30515-T1
Valid prediction for Augustus_model.g20186.t1
Valid prediction for snap_scaffold_12-snap.2749-T1
Valid prediction for snap_scaffold_12-snap.2740-T1
Valid prediction for GlimmerHMM_glimmerT_30508-T1
Valid prediction for GlimmerHMM_glimmerT_30498-T1
Valid prediction for snap_scaffold_12-snap.2753-T1
Valid prediction for snap_scaffold_12-snap.2735-T1
Valid prediction for snap_scaffold_12-snap.2739-T1
Valid prediction for Augustus_model.g20190.t1
Valid prediction for snap_scaffold_12-snap.2745-T1
Valid prediction for Augustus_model.g20195.t1
Valid prediction for snap_scaffold_12-snap.2718-T1
Valid prediction for snap_scaffold_12-snap.2721-T1
Valid prediction for snap_scaffold_12-snap.2744-T1
Valid prediction for snap_scaffold_12-snap.2729-T1
Valid prediction for GlimmerHMM_glimmerT_30501-T1
Valid prediction for GlimmerHMM_glimmerT_30516-T1
Valid prediction for snap_scaffold_12-snap.2728-T1
Valid prediction for Augustus_model.g20193.t1
Valid prediction for snap_scaffold_12-snap.2738-T1
Valid prediction for GlimmerHMM_glimmerT_30504-T1
Valid prediction for snap_scaffold_12-snap.2751-T1
Valid prediction for GlimmerHMM_glimmerT_30511-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 29031, rend_intergenic: 14070  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 37762, rend_intergenic: 33444  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 41277, rend_intergenic: 40236  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 47452, rend_intergenic: 42755  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 53901, rend_intergenic: 47527  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 64384, rend_intergenic: 58310  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 79564, rend_intergenic: 77870  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 88557, rend_intergenic: 82342  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 101944, rend_intergenic: 96324  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 108659, rend_intergenic: 107633  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 119340, rend_intergenic: 113154  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 148457
-exon list size: 255


building trellis

0.4    
0.8    
1.2    
1.6    
1.9    
2.3    
2.7    
3.1    
3.5    
3.9    
4.3    
4.7    
5.1    
5.4    
5.8    
6.2    
6.6    
7.0    
7.4    
7.8    
8.2    
8.6    
8.9    
9.3    
9.7    
10.1    
10.5    
10.9    
11.3    
11.7    
12.1    
12.5    
12.8    
13.2    
13.6    
14.0    
14.4    
14.8    
15.2    
15.6    
16.0    
16.3    
16.7    
17.1    
17.5    
17.9    
18.3    
18.7    
19.1    
19.5    
19.8    
20.2    
20.6    
21.0    
21.4    
21.8    
22.2    
22.6    
23.0    
23.3    
23.7    
24.1    
24.5    
24.9    
25.3    
25.7    
26.1    
26.5    
26.8    
27.2    
27.6    
28.0    
28.4    
28.8    
29.2    
29.6    
30.0    
30.4    
30.7    
31.1    
31.5    
31.9    
32.3    
32.7    
33.1    
33.5    
33.9    
34.2    
34.6    
35.0    
35.4    
35.8    
36.2    
36.6    
37.0    
37.4    
37.7    
38.1    
38.5    
38.9    
39.3    
39.7    
40.1    
40.5    
40.9    
41.2    
41.6    
42.0    
42.4    
42.8    
43.2    
43.6    
44.0    
44.4    
44.7    
45.1    
45.5    
45.9    
46.3    
46.7    
47.1    
47.5    
47.9    
48.2    
48.6    
49.0    
49.4    
49.8    
50.2    
50.6    
51.0    
51.4    
51.8    
52.1    
52.5    
52.9    
53.3    
53.7    
54.1    
54.5    
54.9    
55.3    
55.6    
56.0    
56.4    
56.8    
57.2    
57.6    
58.0    
58.4    
58.8    
59.1    
59.5    
59.9    
60.3    
60.7    
61.1    
61.5    
61.9    
62.3    
62.6    
63.0    
63.4    
63.8    
64.2    
64.6    
65.0    
65.4    
65.8    
66.1    
66.5    
66.9    
67.3    
67.7    
68.1    
68.5    
68.9    
69.3    
69.6    
70.0    
70.4    
70.8    
71.2    
71.6    
72.0    
72.4    
72.8    
73.2    
73.5    
73.9    
74.3    
74.7    
75.1    
75.5    
75.9    
76.3    
76.7    
77.0    
77.4    
77.8    
78.2    
78.6    
79.0    
79.4    
79.8    
80.2    
80.5    
80.9    
81.3    
81.7    
82.1    
82.5    
82.9    
83.3    
83.7    
84.0    
84.4    
84.8    
85.2    
85.6    
86.0    
86.4    
86.8    
87.2    
87.5    
87.9    
88.3    
88.7    
89.1    
89.5    
89.9    
90.3    
90.7    
91.1    
91.4    
91.8    
92.2    
92.6    
93.0    
93.4    
93.8    
94.2    
94.6    
94.9    
95.3    
95.7    
96.1    
96.5    
96.9    
97.3    
97.7    
98.1    
98.4    
98.8    
99.2    
99.6    
-found 24 predictions from path traversal
Error with prediction: snap lend_intergenic: 29031, rend_intergenic: 14070  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 37762, rend_intergenic: 33444  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 41277, rend_intergenic: 40236  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 47452, rend_intergenic: 42755  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 53901, rend_intergenic: 47527  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 64384, rend_intergenic: 58310  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 79564, rend_intergenic: 77870  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 88557, rend_intergenic: 82342  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 101944, rend_intergenic: 96324  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 108659, rend_intergenic: 107633  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 119340, rend_intergenic: 113154  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 7 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 1 - 10959
-exon list size: 5


building trellis

14.3    
28.6    
42.9    
57.1    
71.4    
85.7    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support