-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_12/scaffold_12_14302771-14479303

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_12-snap.2704-T1
Valid prediction for Augustus_model.g20178.t1
Valid prediction for GlimmerHMM_glimmerT_30479-T1
Valid prediction for Augustus_model.g20171.t1
Valid prediction for GlimmerHMM_glimmerT_30489-T1
Valid prediction for snap_scaffold_12-snap.2689-T1
Valid prediction for snap_scaffold_12-snap.2688-T1
Valid prediction for Augustus_model.g20172.t1
Valid prediction for snap_scaffold_12-snap.2707-T1
Valid prediction for snap_scaffold_12-snap.2692-T1
Valid prediction for snap_scaffold_12-snap.2709-T1
Valid prediction for snap_scaffold_12-snap.2705-T1
Valid prediction for GlimmerHMM_glimmerT_30485-T1
Valid prediction for GlimmerHMM_glimmerT_30493-T1
Valid prediction for snap_scaffold_12-snap.2682-T1
Valid prediction for Augustus_model.g20175.t1
Valid prediction for Augustus_model.g20184.t1
Valid prediction for GlimmerHMM_glimmerT_30468-T1
Valid prediction for snap_scaffold_12-snap.2697-T1
Valid prediction for snap_scaffold_12-snap.2685-T1
Valid prediction for snap_scaffold_12-snap.2714-T1
Valid prediction for GlimmerHMM_glimmerT_30471-T1
Valid prediction for GlimmerHMM_glimmerT_30492-T1
Valid prediction for GlimmerHMM_glimmerT_30476-T1
Valid prediction for snap_scaffold_12-snap.2696-T1
Valid prediction for GlimmerHMM_glimmerT_30490-T1
Valid prediction for GlimmerHMM_glimmerT_30478-T1
Valid prediction for GlimmerHMM_glimmerT_30482-T1
Valid prediction for Augustus_model.g20177.t1
Valid prediction for snap_scaffold_12-snap.2702-T1
Valid prediction for snap_scaffold_12-snap.2686-T1
Valid prediction for GlimmerHMM_glimmerT_30483-T1
Valid prediction for Augustus_model.g20179.t1
Valid prediction for GlimmerHMM_glimmerT_30469-T1
Valid prediction for Augustus_model.g20181.t1
Valid prediction for GlimmerHMM_glimmerT_30467-T1
Valid prediction for Augustus_model.g20176.t1
Valid prediction for GlimmerHMM_glimmerT_30497-T1
Valid prediction for Augustus_model.g20182.t1
Valid prediction for snap_scaffold_12-snap.2695-T1
Valid prediction for snap_scaffold_12-snap.2700-T1
Valid prediction for snap_scaffold_12-snap.2706-T1
Valid prediction for GlimmerHMM_glimmerT_30487-T1
Valid prediction for GlimmerHMM_glimmerT_30494-T1
Valid prediction for GlimmerHMM_glimmerT_30477-T1
Valid prediction for Augustus_model.g20183.t1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for Augustus_model.g20180.t1
Valid prediction for Augustus_model.g20173.t1
Valid prediction for snap_scaffold_12-snap.2690-T1
Valid prediction for snap_scaffold_12-snap.2715-T1
Sorry, intron length (3) is less than minimum required (10)
Valid prediction for GlimmerHMM_glimmerT_30474-T1
Valid prediction for Augustus_model.g20174.t1
Valid prediction for GlimmerHMM_glimmerT_30473-T1
Valid prediction for snap_scaffold_12-snap.2712-T1
Valid prediction for GlimmerHMM_glimmerT_30496-T1
Valid prediction for snap_scaffold_12-snap.2701-T1
Valid prediction for snap_scaffold_12-snap.2711-T1
Valid prediction for snap_scaffold_12-snap.2691-T1
Valid prediction for snap_scaffold_12-snap.2683-T1
Valid prediction for snap_scaffold_12-snap.2699-T1
Valid prediction for GlimmerHMM_glimmerT_30480-T1
Valid prediction for GlimmerHMM_glimmerT_30486-T1
Valid prediction for GlimmerHMM_glimmerT_30470-T1
Valid prediction for snap_scaffold_12-snap.2698-T1
Valid prediction for GlimmerHMM_glimmerT_30491-T1
Valid prediction for snap_scaffold_12-snap.2710-T1
Valid prediction for GlimmerHMM_glimmerT_30472-T1
Valid prediction for GlimmerHMM_glimmerT_30475-T1
Valid prediction for GlimmerHMM_glimmerT_30484-T1
Valid prediction for GlimmerHMM_glimmerT_30466-T1
Valid prediction for GlimmerHMM_glimmerT_30481-T1
Valid prediction for snap_scaffold_12-snap.2708-T1
Valid prediction for GlimmerHMM_glimmerT_30495-T1
Valid prediction for snap_scaffold_12-snap.2693-T1
Valid prediction for snap_scaffold_12-snap.2694-T1
Valid prediction for snap_scaffold_12-snap.2684-T1
Valid prediction for snap_scaffold_12-snap.2713-T1
Valid prediction for GlimmerHMM_glimmerT_30488-T1
Valid prediction for snap_scaffold_12-snap.2703-T1
Valid prediction for snap_scaffold_12-snap.2687-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 7422, rend_intergenic: 1642  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 13719, rend_intergenic: 7510  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 20899, rend_intergenic: 16498  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 31476, rend_intergenic: 21010  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 43905, rend_intergenic: 31528  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 48101, rend_intergenic: 44844  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 57536, rend_intergenic: 50122  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 65907, rend_intergenic: 64397  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 77694, rend_intergenic: 70851  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 83183, rend_intergenic: 80702  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 90677, rend_intergenic: 86436  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 96138, rend_intergenic: 91354  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 155672, rend_intergenic: 136576  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 173846, rend_intergenic: 169366  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 176533
-exon list size: 313


building trellis

0.3    
0.6    
1.0    
1.3    
1.6    
1.9    
2.2    
2.5    
2.9    
3.2    
3.5    
3.8    
4.1    
4.4    
4.8    
5.1    
5.4    
5.7    
6.0    
6.3    
6.7    
7.0    
7.3    
7.6    
7.9    
8.3    
8.6    
8.9    
9.2    
9.5    
9.8    
10.2    
10.5    
10.8    
11.1    
11.4    
11.7    
12.1    
12.4    
12.7    
13.0    
13.3    
13.7    
14.0    
14.3    
14.6    
14.9    
15.2    
15.6    
15.9    
16.2    
16.5    
16.8    
17.1    
17.5    
17.8    
18.1    
18.4    
18.7    
19.0    
19.4    
19.7    
20.0    
20.3    
20.6    
21.0    
21.3    
21.6    
21.9    
22.2    
22.5    
22.9    
23.2    
23.5    
23.8    
24.1    
24.4    
24.8    
25.1    
25.4    
25.7    
26.0    
26.3    
26.7    
27.0    
27.3    
27.6    
27.9    
28.3    
28.6    
28.9    
29.2    
29.5    
29.8    
30.2    
30.5    
30.8    
31.1    
31.4    
31.7    
32.1    
32.4    
32.7    
33.0    
33.3    
33.7    
34.0    
34.3    
34.6    
34.9    
35.2    
35.6    
35.9    
36.2    
36.5    
36.8    
37.1    
37.5    
37.8    
38.1    
38.4    
38.7    
39.0    
39.4    
39.7    
40.0    
40.3    
40.6    
41.0    
41.3    
41.6    
41.9    
42.2    
42.5    
42.9    
43.2    
43.5    
43.8    
44.1    
44.4    
44.8    
45.1    
45.4    
45.7    
46.0    
46.3    
46.7    
47.0    
47.3    
47.6    
47.9    
48.3    
48.6    
48.9    
49.2    
49.5    
49.8    
50.2    
50.5    
50.8    
51.1    
51.4    
51.7    
52.1    
52.4    
52.7    
53.0    
53.3    
53.7    
54.0    
54.3    
54.6    
54.9    
55.2    
55.6    
55.9    
56.2    
56.5    
56.8    
57.1    
57.5    
57.8    
58.1    
58.4    
58.7    
59.0    
59.4    
59.7    
60.0    
60.3    
60.6    
61.0    
61.3    
61.6    
61.9    
62.2    
62.5    
62.9    
63.2    
63.5    
63.8    
64.1    
64.4    
64.8    
65.1    
65.4    
65.7    
66.0    
66.3    
66.7    
67.0    
67.3    
67.6    
67.9    
68.3    
68.6    
68.9    
69.2    
69.5    
69.8    
70.2    
70.5    
70.8    
71.1    
71.4    
71.7    
72.1    
72.4    
72.7    
73.0    
73.3    
73.7    
74.0    
74.3    
74.6    
74.9    
75.2    
75.6    
75.9    
76.2    
76.5    
76.8    
77.1    
77.5    
77.8    
78.1    
78.4    
78.7    
79.0    
79.4    
79.7    
80.0    
80.3    
80.6    
81.0    
81.3    
81.6    
81.9    
82.2    
82.5    
82.9    
83.2    
83.5    
83.8    
84.1    
84.4    
84.8    
85.1    
85.4    
85.7    
86.0    
86.3    
86.7    
87.0    
87.3    
87.6    
87.9    
88.3    
88.6    
88.9    
89.2    
89.5    
89.8    
90.2    
90.5    
90.8    
91.1    
91.4    
91.7    
92.1    
92.4    
92.7    
93.0    
93.3    
93.7    
94.0    
94.3    
94.6    
94.9    
95.2    
95.6    
95.9    
96.2    
96.5    
96.8    
97.1    
97.5    
97.8    
98.1    
98.4    
98.7    
99.0    
99.4    
99.7    
-found 27 predictions from path traversal
Error with prediction: snap lend_intergenic: 7422, rend_intergenic: 1642  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 13719, rend_intergenic: 7510  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 20899, rend_intergenic: 16498  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 31476, rend_intergenic: 21010  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 43905, rend_intergenic: 31528  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 48101, rend_intergenic: 44844  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 57536, rend_intergenic: 50122  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 65907, rend_intergenic: 64397  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 77694, rend_intergenic: 70851  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 83183, rend_intergenic: 80702  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 90677, rend_intergenic: 86436  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 96138, rend_intergenic: 91354  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 155672, rend_intergenic: 136576  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 173846, rend_intergenic: 169366  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 18 predictions persist after filtering for low support