-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_12/scaffold_12_13772266-13914308

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_12-snap.2575-T1
Valid prediction for snap_scaffold_12-snap.2565-T1
Valid prediction for GlimmerHMM_glimmerT_30389-T1
Valid prediction for GlimmerHMM_glimmerT_30391-T1
Valid prediction for snap_scaffold_12-snap.2558-T1
Valid prediction for Augustus_model.g20110.t1
Valid prediction for GlimmerHMM_glimmerT_30398-T1
Valid prediction for GlimmerHMM_glimmerT_30393-T1
Valid prediction for GlimmerHMM_glimmerT_30402-T1
Valid prediction for snap_scaffold_12-snap.2589-T1
Valid prediction for GlimmerHMM_glimmerT_30407-T1
Valid prediction for GlimmerHMM_glimmerT_30401-T1
Valid prediction for snap_scaffold_12-snap.2560-T1
Valid prediction for snap_scaffold_12-snap.2578-T1
Valid prediction for snap_scaffold_12-snap.2573-T1
Valid prediction for snap_scaffold_12-snap.2585-T1
Valid prediction for snap_scaffold_12-snap.2571-T1
Valid prediction for GlimmerHMM_glimmerT_30396-T1
Valid prediction for snap_scaffold_12-snap.2567-T1
Valid prediction for GlimmerHMM_glimmerT_30383-T1
Valid prediction for snap_scaffold_12-snap.2561-T1
Valid prediction for GlimmerHMM_glimmerT_30404-T1
Valid prediction for GlimmerHMM_glimmerT_30405-T1
Valid prediction for snap_scaffold_12-snap.2584-T1
Valid prediction for GlimmerHMM_glimmerT_30395-T1
Valid prediction for Augustus_model.g20117.t1
Valid prediction for GlimmerHMM_glimmerT_30387-T1
Valid prediction for snap_scaffold_12-snap.2576-T1
Valid prediction for snap_scaffold_12-snap.2580-T1
Valid prediction for GlimmerHMM_glimmerT_30394-T1
Valid prediction for Augustus_model.g20121.t1
Valid prediction for snap_scaffold_12-snap.2588-T1
Valid prediction for Augustus_model.g20109.t1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_12-snap.2559-T1
Valid prediction for GlimmerHMM_glimmerT_30384-T1
Valid prediction for Augustus_model.g20115.t1
Valid prediction for snap_scaffold_12-snap.2568-T1
Valid prediction for snap_scaffold_12-snap.2569-T1
Valid prediction for Augustus_model.g20119.t1
Valid prediction for GlimmerHMM_glimmerT_30399-T1
Valid prediction for Augustus_model.g20111.t1
Valid prediction for snap_scaffold_12-snap.2581-T1
Valid prediction for GlimmerHMM_glimmerT_30406-T1
Valid prediction for snap_scaffold_12-snap.2572-T1
Valid prediction for GlimmerHMM_glimmerT_30400-T1
Valid prediction for snap_scaffold_12-snap.2564-T1
Valid prediction for snap_scaffold_12-snap.2577-T1
Valid prediction for snap_scaffold_12-snap.2586-T1
Valid prediction for snap_scaffold_12-snap.2590-T1
Valid prediction for snap_scaffold_12-snap.2583-T1
Valid prediction for snap_scaffold_12-snap.2587-T1
Valid prediction for snap_scaffold_12-snap.2579-T1
Valid prediction for snap_scaffold_12-snap.2570-T1
Valid prediction for GlimmerHMM_glimmerT_30392-T1
Valid prediction for Augustus_model.g20118.t1
Valid prediction for Augustus_model.g20116.t1
Valid prediction for Augustus_model.g20114.t1
Valid prediction for Augustus_model.g20113.t1
Valid prediction for GlimmerHMM_glimmerT_30388-T1
Valid prediction for GlimmerHMM_glimmerT_30382-T1
Valid prediction for GlimmerHMM_glimmerT_30403-T1
Valid prediction for snap_scaffold_12-snap.2582-T1
Valid prediction for GlimmerHMM_glimmerT_30386-T1
Valid prediction for snap_scaffold_12-snap.2562-T1
Valid prediction for GlimmerHMM_glimmerT_30390-T1
Valid prediction for GlimmerHMM_glimmerT_30397-T1
Valid prediction for GlimmerHMM_glimmerT_30385-T1
Valid prediction for snap_scaffold_12-snap.2592-T1
Valid prediction for GlimmerHMM_glimmerT_30381-T1
Valid prediction for snap_scaffold_12-snap.2566-T1
Valid prediction for Augustus_model.g20112.t1
Valid prediction for Augustus_model.g20120.t1
Valid prediction for snap_scaffold_12-snap.2574-T1
Valid prediction for GlimmerHMM_glimmerT_30380-T1
Valid prediction for snap_scaffold_12-snap.2563-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: GlimmerHMM lend_intergenic: 117882, rend_intergenic: 117879  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 12836, rend_intergenic: 7429  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 16745, rend_intergenic: 14654  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 19461, rend_intergenic: 16776  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 26302, rend_intergenic: 19525  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 32294, rend_intergenic: 30334  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 34274, rend_intergenic: 32439  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 38648, rend_intergenic: 35167  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 40581, rend_intergenic: 38958  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 55820, rend_intergenic: 41223  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 70826, rend_intergenic: 68974  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 74754, rend_intergenic: 73353  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 81876, rend_intergenic: 78550  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 97832, rend_intergenic: 86470  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 107134, rend_intergenic: 100576  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 118049, rend_intergenic: 113811  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 124737, rend_intergenic: 122609  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 142043
-exon list size: 239


building trellis

0.4    
0.8    
1.2    
1.7    
2.1    
2.5    
2.9    
3.3    
3.7    
4.1    
4.6    
5.0    
5.4    
5.8    
6.2    
6.6    
7.1    
7.5    
7.9    
8.3    
8.7    
9.1    
9.5    
10.0    
10.4    
10.8    
11.2    
11.6    
12.0    
12.4    
12.9    
13.3    
13.7    
14.1    
14.5    
14.9    
15.4    
15.8    
16.2    
16.6    
17.0    
17.4    
17.8    
18.3    
18.7    
19.1    
19.5    
19.9    
20.3    
20.7    
21.2    
21.6    
22.0    
22.4    
22.8    
23.2    
23.7    
24.1    
24.5    
24.9    
25.3    
25.7    
26.1    
26.6    
27.0    
27.4    
27.8    
28.2    
28.6    
29.0    
29.5    
29.9    
30.3    
30.7    
31.1    
31.5    
32.0    
32.4    
32.8    
33.2    
33.6    
34.0    
34.4    
34.9    
35.3    
35.7    
36.1    
36.5    
36.9    
37.3    
37.8    
38.2    
38.6    
39.0    
39.4    
39.8    
40.2    
40.7    
41.1    
41.5    
41.9    
42.3    
42.7    
43.2    
43.6    
44.0    
44.4    
44.8    
45.2    
45.6    
46.1    
46.5    
46.9    
47.3    
47.7    
48.1    
48.5    
49.0    
49.4    
49.8    
50.2    
50.6    
51.0    
51.5    
51.9    
52.3    
52.7    
53.1    
53.5    
53.9    
54.4    
54.8    
55.2    
55.6    
56.0    
56.4    
56.8    
57.3    
57.7    
58.1    
58.5    
58.9    
59.3    
59.8    
60.2    
60.6    
61.0    
61.4    
61.8    
62.2    
62.7    
63.1    
63.5    
63.9    
64.3    
64.7    
65.1    
65.6    
66.0    
66.4    
66.8    
67.2    
67.6    
68.0    
68.5    
68.9    
69.3    
69.7    
70.1    
70.5    
71.0    
71.4    
71.8    
72.2    
72.6    
73.0    
73.4    
73.9    
74.3    
74.7    
75.1    
75.5    
75.9    
76.3    
76.8    
77.2    
77.6    
78.0    
78.4    
78.8    
79.3    
79.7    
80.1    
80.5    
80.9    
81.3    
81.7    
82.2    
82.6    
83.0    
83.4    
83.8    
84.2    
84.6    
85.1    
85.5    
85.9    
86.3    
86.7    
87.1    
87.6    
88.0    
88.4    
88.8    
89.2    
89.6    
90.0    
90.5    
90.9    
91.3    
91.7    
92.1    
92.5    
92.9    
93.4    
93.8    
94.2    
94.6    
95.0    
95.4    
95.9    
96.3    
96.7    
97.1    
97.5    
97.9    
98.3    
98.8    
99.2    
99.6    
-found 30 predictions from path traversal
Error with prediction: GlimmerHMM lend_intergenic: 117882, rend_intergenic: 117879  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 12836, rend_intergenic: 7429  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 16745, rend_intergenic: 14654  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 19461, rend_intergenic: 16776  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 26302, rend_intergenic: 19525  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 32294, rend_intergenic: 30334  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 34274, rend_intergenic: 32439  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 38648, rend_intergenic: 35167  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 40581, rend_intergenic: 38958  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 55820, rend_intergenic: 41223  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 70826, rend_intergenic: 68974  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 74754, rend_intergenic: 73353  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 81876, rend_intergenic: 78550  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 97832, rend_intergenic: 86470  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 107134, rend_intergenic: 100576  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 118049, rend_intergenic: 113811  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 124737, rend_intergenic: 122609  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 10 predictions persist after filtering for low support