-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_12/scaffold_12_13549091-13774819

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_12-snap.2536-T1
Valid prediction for snap_scaffold_12-snap.2557-T1
Valid prediction for Augustus_model.g20094.t1
Valid prediction for snap_scaffold_12-snap.2533-T1
Valid prediction for snap_scaffold_12-snap.2524-T1
Valid prediction for snap_scaffold_12-snap.2522-T1
Valid prediction for snap_scaffold_12-snap.2547-T1
Valid prediction for snap_scaffold_12-snap.2542-T1
Valid prediction for snap_scaffold_12-snap.2554-T1
Valid prediction for GlimmerHMM_glimmerT_30362-T1
Valid prediction for Augustus_model.g20102.t1
Valid prediction for snap_scaffold_12-snap.2529-T1
Valid prediction for GlimmerHMM_glimmerT_30359-T1
Valid prediction for snap_scaffold_12-snap.2531-T1
Valid prediction for snap_scaffold_12-snap.2537-T1
Valid prediction for GlimmerHMM_glimmerT_30355-T1
Valid prediction for snap_scaffold_12-snap.2540-T1
Valid prediction for Augustus_model.g20097.t1
Valid prediction for Augustus_model.g20108.t1
Valid prediction for snap_scaffold_12-snap.2511-T1
Valid prediction for GlimmerHMM_glimmerT_30354-T1
Valid prediction for snap_scaffold_12-snap.2521-T1
Valid prediction for Augustus_model.g20096.t1
Valid prediction for Augustus_model.g20103.t1
Valid prediction for GlimmerHMM_glimmerT_30368-T1
Valid prediction for Augustus_model.g20106.t1
Valid prediction for snap_scaffold_12-snap.2544-T1
Valid prediction for GlimmerHMM_glimmerT_30353-T1
Valid prediction for snap_scaffold_12-snap.2515-T1
Valid prediction for snap_scaffold_12-snap.2525-T1
Valid prediction for GlimmerHMM_glimmerT_30363-T1
Valid prediction for GlimmerHMM_glimmerT_30365-T1
Valid prediction for Augustus_model.g20088.t1
Valid prediction for GlimmerHMM_glimmerT_30373-T1
Valid prediction for GlimmerHMM_glimmerT_30370-T1
Valid prediction for snap_scaffold_12-snap.2520-T1
Valid prediction for Augustus_model.g20089.t1
Valid prediction for Augustus_model.g20098.t1
Valid prediction for snap_scaffold_12-snap.2534-T1
Valid prediction for snap_scaffold_12-snap.2545-T1
Valid prediction for GlimmerHMM_glimmerT_30360-T1
Valid prediction for snap_scaffold_12-snap.2550-T1
Valid prediction for Augustus_model.g20090.t1
Valid prediction for snap_scaffold_12-snap.2517-T1
Valid prediction for GlimmerHMM_glimmerT_30371-T1
Valid prediction for snap_scaffold_12-snap.2513-T1
Valid prediction for GlimmerHMM_glimmerT_30357-T1
Valid prediction for Augustus_model.g20095.t1
Valid prediction for Augustus_model.g20104.t1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_12-snap.2549-T1
Valid prediction for Augustus_model.g20105.t1
Valid prediction for snap_scaffold_12-snap.2552-T1
Valid prediction for snap_scaffold_12-snap.2553-T1
Valid prediction for GlimmerHMM_glimmerT_30372-T1
Valid prediction for snap_scaffold_12-snap.2556-T1
Valid prediction for GlimmerHMM_glimmerT_30375-T1
Valid prediction for GlimmerHMM_glimmerT_30358-T1
Valid prediction for Augustus_model.g20101.t1
Valid prediction for Augustus_model.g20093.t1
Valid prediction for GlimmerHMM_glimmerT_30374-T1
Valid prediction for Augustus_model.g20092.t1
Valid prediction for snap_scaffold_12-snap.2539-T1
Valid prediction for Augustus_model.g20107.t1
Valid prediction for snap_scaffold_12-snap.2519-T1
Valid prediction for GlimmerHMM_glimmerT_30379-T1
Valid prediction for snap_scaffold_12-snap.2538-T1
Valid prediction for snap_scaffold_12-snap.2548-T1
Valid prediction for GlimmerHMM_glimmerT_30376-T1
Valid prediction for snap_scaffold_12-snap.2541-T1
Valid prediction for snap_scaffold_12-snap.2528-T1
Valid prediction for snap_scaffold_12-snap.2546-T1
Valid prediction for snap_scaffold_12-snap.2527-T1
Valid prediction for GlimmerHMM_glimmerT_30366-T1
Valid prediction for GlimmerHMM_glimmerT_30377-T1
Valid prediction for snap_scaffold_12-snap.2518-T1
Valid prediction for snap_scaffold_12-snap.2543-T1
Valid prediction for snap_scaffold_12-snap.2516-T1
Valid prediction for GlimmerHMM_glimmerT_30378-T1
Valid prediction for snap_scaffold_12-snap.2523-T1
Valid prediction for GlimmerHMM_glimmerT_30367-T1
Valid prediction for pasa_asmbl_8952.p1
Valid prediction for snap_scaffold_12-snap.2512-T1
Valid prediction for snap_scaffold_12-snap.2551-T1
Valid prediction for GlimmerHMM_glimmerT_30361-T1
Valid prediction for CodingQuarry_transcript_10451-T1
Valid prediction for GlimmerHMM_glimmerT_30369-T1
Valid prediction for GlimmerHMM_glimmerT_30356-T1
Valid prediction for GlimmerHMM_glimmerT_30364-T1
Valid prediction for snap_scaffold_12-snap.2532-T1
Valid prediction for Augustus_model.g20099.t1
Valid prediction for snap_scaffold_12-snap.2526-T1
Valid prediction for HiQ_model.g20100.t1
Valid prediction for snap_scaffold_12-snap.2535-T1
Valid prediction for Augustus_model.g20091.t1
Valid prediction for snap_scaffold_12-snap.2514-T1
Valid prediction for snap_scaffold_12-snap.2555-T1
Valid prediction for snap_scaffold_12-snap.2530-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 21418, rend_intergenic: 13671  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 36015, rend_intergenic: 33812  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 38822, rend_intergenic: 36353  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 47443, rend_intergenic: 39874  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 52234, rend_intergenic: 49338  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 57622, rend_intergenic: 53999  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 64868, rend_intergenic: 58087  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 87477, rend_intergenic: 65073  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 97046, rend_intergenic: 88953  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 111504, rend_intergenic: 105452  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 128607, rend_intergenic: 126974  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 139553, rend_intergenic: 130103  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 148773, rend_intergenic: 144301  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 159343, rend_intergenic: 151933  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 166687, rend_intergenic: 162180  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 168717, rend_intergenic: 166729  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 181522, rend_intergenic: 171555  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 186357, rend_intergenic: 185509  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 218848, rend_intergenic: 207864  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 224327, rend_intergenic: 219742  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 225729
-exon list size: 456


building trellis

0.2    
0.4    
0.7    
0.9    
1.1    
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1.5    
1.7    
2.0    
2.2    
2.4    
2.6    
2.8    
3.1    
3.3    
3.5    
3.7    
3.9    
4.1    
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4.6    
4.8    
5.0    
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5.5    
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5.9    
6.1    
6.3    
6.6    
6.8    
7.0    
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7.4    
7.6    
7.9    
8.1    
8.3    
8.5    
8.7    
9.0    
9.2    
9.4    
9.6    
9.8    
10.0    
10.3    
10.5    
10.7    
10.9    
11.1    
11.4    
11.6    
11.8    
12.0    
12.2    
12.4    
12.7    
12.9    
13.1    
13.3    
13.5    
13.8    
14.0    
14.2    
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14.6    
14.8    
15.1    
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15.7    
15.9    
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16.8    
17.0    
17.2    
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17.9    
18.1    
18.3    
18.6    
18.8    
19.0    
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19.7    
19.9    
20.1    
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21.0    
21.2    
21.4    
21.6    
21.8    
22.1    
22.3    
22.5    
22.7    
22.9    
23.1    
23.4    
23.6    
23.8    
24.0    
24.2    
24.5    
24.7    
24.9    
25.1    
25.3    
25.5    
25.8    
26.0    
26.2    
26.4    
26.6    
26.9    
27.1    
27.3    
27.5    
27.7    
27.9    
28.2    
28.4    
28.6    
28.8    
29.0    
29.3    
29.5    
29.7    
29.9    
30.1    
30.3    
30.6    
30.8    
31.0    
31.2    
31.4    
31.7    
31.9    
32.1    
32.3    
32.5    
32.8    
33.0    
33.2    
33.4    
33.6    
33.8    
34.1    
34.3    
34.5    
34.7    
34.9    
35.2    
35.4    
35.6    
35.8    
36.0    
36.2    
36.5    
36.7    
36.9    
37.1    
37.3    
37.6    
37.8    
38.0    
38.2    
38.4    
38.6    
38.9    
39.1    
39.3    
39.5    
39.7    
40.0    
40.2    
40.4    
40.6    
40.8    
41.0    
41.3    
41.5    
41.7    
41.9    
42.1    
42.4    
42.6    
42.8    
43.0    
43.2    
43.4    
43.7    
43.9    
44.1    
44.3    
44.5    
44.8    
45.0    
45.2    
45.4    
45.6    
45.9    
46.1    
46.3    
46.5    
46.7    
46.9    
47.2    
47.4    
47.6    
47.8    
48.0    
48.3    
48.5    
48.7    
48.9    
49.1    
49.3    
49.6    
49.8    
50.0    
50.2    
50.4    
50.7    
50.9    
51.1    
51.3    
51.5    
51.7    
52.0    
52.2    
52.4    
52.6    
52.8    
53.1    
53.3    
53.5    
53.7    
53.9    
54.1    
54.4    
54.6    
54.8    
55.0    
55.2    
55.5    
55.7    
55.9    
56.1    
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56.6    
56.8    
57.0    
57.2    
57.4    
57.6    
57.9    
58.1    
58.3    
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58.7    
59.0    
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59.6    
59.8    
60.0    
60.3    
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60.9    
61.1    
61.4    
61.6    
61.8    
62.0    
62.2    
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62.7    
62.9    
63.1    
63.3    
63.5    
63.8    
64.0    
64.2    
64.4    
64.6    
64.8    
65.1    
65.3    
65.5    
65.7    
65.9    
66.2    
66.4    
66.6    
66.8    
67.0    
67.2    
67.5    
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67.9    
68.1    
68.3    
68.6    
68.8    
69.0    
69.2    
69.4    
69.7    
69.9    
70.1    
70.3    
70.5    
70.7    
71.0    
71.2    
71.4    
71.6    
71.8    
72.1    
72.3    
72.5    
72.7    
72.9    
73.1    
73.4    
73.6    
73.8    
74.0    
74.2    
74.5    
74.7    
74.9    
75.1    
75.3    
75.5    
75.8    
76.0    
76.2    
76.4    
76.6    
76.9    
77.1    
77.3    
77.5    
77.7    
77.9    
78.2    
78.4    
78.6    
78.8    
79.0    
79.3    
79.5    
79.7    
79.9    
80.1    
80.3    
80.6    
80.8    
81.0    
81.2    
81.4    
81.7    
81.9    
82.1    
82.3    
82.5    
82.8    
83.0    
83.2    
83.4    
83.6    
83.8    
84.1    
84.3    
84.5    
84.7    
84.9    
85.2    
85.4    
85.6    
85.8    
86.0    
86.2    
86.5    
86.7    
86.9    
87.1    
87.3    
87.6    
87.8    
88.0    
88.2    
88.4    
88.6    
88.9    
89.1    
89.3    
89.5    
89.7    
90.0    
90.2    
90.4    
90.6    
90.8    
91.0    
91.3    
91.5    
91.7    
91.9    
92.1    
92.4    
92.6    
92.8    
93.0    
93.2    
93.4    
93.7    
93.9    
94.1    
94.3    
94.5    
94.8    
95.0    
95.2    
95.4    
95.6    
95.9    
96.1    
96.3    
96.5    
96.7    
96.9    
97.2    
97.4    
97.6    
97.8    
98.0    
98.3    
98.5    
98.7    
98.9    
99.1    
99.3    
99.6    
99.8    
-found 35 predictions from path traversal
Error with prediction: snap lend_intergenic: 21418, rend_intergenic: 13671  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 36015, rend_intergenic: 33812  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 38822, rend_intergenic: 36353  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 47443, rend_intergenic: 39874  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 52234, rend_intergenic: 49338  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 57622, rend_intergenic: 53999  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 64868, rend_intergenic: 58087  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 87477, rend_intergenic: 65073  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 97046, rend_intergenic: 88953  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 111504, rend_intergenic: 105452  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 128607, rend_intergenic: 126974  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 139553, rend_intergenic: 130103  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 148773, rend_intergenic: 144301  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 159343, rend_intergenic: 151933  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 166687, rend_intergenic: 162180  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 168717, rend_intergenic: 166729  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 181522, rend_intergenic: 171555  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 186357, rend_intergenic: 185509  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 218848, rend_intergenic: 207864  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 224327, rend_intergenic: 219742  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 21 predictions persist after filtering for low support