-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_12/scaffold_12_13364861-13561671

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for Augustus_model.g20083.t1
Valid prediction for GlimmerHMM_glimmerT_30332-T1
Valid prediction for GlimmerHMM_glimmerT_30352-T1
Valid prediction for snap_scaffold_12-snap.2481-T1
Valid prediction for GlimmerHMM_glimmerT_30336-T1
Valid prediction for snap_scaffold_12-snap.2470-T1
Valid prediction for Augustus_model.g20081.t1
Valid prediction for Augustus_model.g20084.t1
Valid prediction for snap_scaffold_12-snap.2467-T1
Valid prediction for GlimmerHMM_glimmerT_30335-T1
Valid prediction for snap_scaffold_12-snap.2496-T1
Valid prediction for GlimmerHMM_glimmerT_30343-T1
Valid prediction for snap_scaffold_12-snap.2505-T1
Valid prediction for snap_scaffold_12-snap.2495-T1
Valid prediction for GlimmerHMM_glimmerT_30327-T1
Valid prediction for snap_scaffold_12-snap.2511-T1
Valid prediction for GlimmerHMM_glimmerT_30340-T1
Valid prediction for snap_scaffold_12-snap.2494-T1
Valid prediction for snap_scaffold_12-snap.2474-T1
Valid prediction for snap_scaffold_12-snap.2463-T1
Valid prediction for snap_scaffold_12-snap.2475-T1
Valid prediction for snap_scaffold_12-snap.2487-T1
Valid prediction for snap_scaffold_12-snap.2479-T1
Valid prediction for snap_scaffold_12-snap.2484-T1
Valid prediction for GlimmerHMM_glimmerT_30324-T1
Valid prediction for Augustus_model.g20089.t1
Valid prediction for Augustus_model.g20079.t1
Valid prediction for GlimmerHMM_glimmerT_30342-T1
Valid prediction for Augustus_model.g20088.t1
Valid prediction for GlimmerHMM_glimmerT_30337-T1
Valid prediction for snap_scaffold_12-snap.2469-T1
Valid prediction for GlimmerHMM_glimmerT_30347-T1
Valid prediction for snap_scaffold_12-snap.2465-T1
Valid prediction for GlimmerHMM_glimmerT_30331-T1
Valid prediction for GlimmerHMM_glimmerT_30346-T1
Valid prediction for snap_scaffold_12-snap.2462-T1
Valid prediction for snap_scaffold_12-snap.2509-T1
Valid prediction for Augustus_model.g20077.t1
Valid prediction for snap_scaffold_12-snap.2492-T1
Valid prediction for Augustus_model.g20074.t1
Valid prediction for GlimmerHMM_glimmerT_30330-T1
Valid prediction for snap_scaffold_12-snap.2502-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_12-snap.2480-T1
Valid prediction for GlimmerHMM_glimmerT_30350-T1
Valid prediction for pasa_asmbl_8943.p1
Valid prediction for snap_scaffold_12-snap.2476-T1
Valid prediction for GlimmerHMM_glimmerT_30333-T1
Valid prediction for Augustus_model.g20085.t1
Valid prediction for snap_scaffold_12-snap.2510-T1
Valid prediction for snap_scaffold_12-snap.2468-T1
Valid prediction for GlimmerHMM_glimmerT_30326-T1
Valid prediction for snap_scaffold_12-snap.2493-T1
Valid prediction for GlimmerHMM_glimmerT_30338-T1
Valid prediction for snap_scaffold_12-snap.2491-T1
Valid prediction for snap_scaffold_12-snap.2466-T1
Valid prediction for Augustus_model.g20078.t1
Valid prediction for Augustus_model.g20080.t1
Valid prediction for snap_scaffold_12-snap.2473-T1
Valid prediction for GlimmerHMM_glimmerT_30325-T1
Valid prediction for snap_scaffold_12-snap.2508-T1
Valid prediction for Augustus_model.g20087.t1
Valid prediction for GlimmerHMM_glimmerT_30323-T1
Valid prediction for snap_scaffold_12-snap.2485-T1
Valid prediction for snap_scaffold_12-snap.2461-T1
Valid prediction for Augustus_model.g20086.t1
Valid prediction for CodingQuarry_transcript_10449-T1
Valid prediction for snap_scaffold_12-snap.2503-T1
Valid prediction for snap_scaffold_12-snap.2498-T1
Valid prediction for snap_scaffold_12-snap.2490-T1
Valid prediction for snap_scaffold_12-snap.2472-T1
Valid prediction for CodingQuarry_transcript_10448-T1
Valid prediction for snap_scaffold_12-snap.2486-T1
Valid prediction for GlimmerHMM_glimmerT_30341-T1
Valid prediction for GlimmerHMM_glimmerT_30339-T1
Valid prediction for GlimmerHMM_glimmerT_30351-T1
Valid prediction for snap_scaffold_12-snap.2489-T1
Valid prediction for snap_scaffold_12-snap.2464-T1
Valid prediction for GlimmerHMM_glimmerT_30329-T1
Valid prediction for snap_scaffold_12-snap.2482-T1
Valid prediction for CodingQuarry_transcript_10450-T1
Valid prediction for GlimmerHMM_glimmerT_30344-T1
Valid prediction for snap_scaffold_12-snap.2507-T1
Valid prediction for HiQ_model.g20082.t1
Valid prediction for snap_scaffold_12-snap.2483-T1
Valid prediction for snap_scaffold_12-snap.2497-T1
Valid prediction for snap_scaffold_12-snap.2499-T1
Valid prediction for GlimmerHMM_glimmerT_30345-T1
Valid prediction for GlimmerHMM_glimmerT_30334-T1
Valid prediction for snap_scaffold_12-snap.2500-T1
Valid prediction for snap_scaffold_12-snap.2506-T1
Valid prediction for Augustus_model.g20076.t1
Valid prediction for GlimmerHMM_glimmerT_30349-T1
Valid prediction for snap_scaffold_12-snap.2471-T1
Valid prediction for Augustus_model.g20075.t1
Valid prediction for snap_scaffold_12-snap.2504-T1
Valid prediction for snap_scaffold_12-snap.2488-T1
Valid prediction for snap_scaffold_12-snap.2501-T1
Valid prediction for GlimmerHMM_glimmerT_30348-T1
Valid prediction for snap_scaffold_12-snap.2478-T1
Valid prediction for GlimmerHMM_glimmerT_30328-T1
Valid prediction for snap_scaffold_12-snap.2477-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 27065, rend_intergenic: 24691  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 29857, rend_intergenic: 27158  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 52334, rend_intergenic: 37226  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 74418, rend_intergenic: 52503  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 82128, rend_intergenic: 75068  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 88511, rend_intergenic: 84285  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 91987, rend_intergenic: 88733  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 98251, rend_intergenic: 92554  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 100541, rend_intergenic: 98609  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 106771, rend_intergenic: 100849  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 111128, rend_intergenic: 109083  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 125422, rend_intergenic: 112550  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 131799, rend_intergenic: 128354  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 141603, rend_intergenic: 137904  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 157769, rend_intergenic: 151736  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 164789, rend_intergenic: 158326  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 173949, rend_intergenic: 173642  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 187319, rend_intergenic: 182908  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 196811
-exon list size: 409


building trellis

0.2    
0.5    
0.7    
1.0    
1.2    
1.5    
1.7    
1.9    
2.2    
2.4    
2.7    
2.9    
3.2    
3.4    
3.6    
3.9    
4.1    
4.4    
4.6    
4.9    
5.1    
5.4    
5.6    
5.8    
6.1    
6.3    
6.6    
6.8    
7.1    
7.3    
7.5    
7.8    
8.0    
8.3    
8.5    
8.8    
9.0    
9.2    
9.5    
9.7    
10.0    
10.2    
10.5    
10.7    
10.9    
11.2    
11.4    
11.7    
11.9    
12.2    
12.4    
12.7    
12.9    
13.1    
13.4    
13.6    
13.9    
14.1    
14.4    
14.6    
14.8    
15.1    
15.3    
15.6    
15.8    
16.1    
16.3    
16.5    
16.8    
17.0    
17.3    
17.5    
17.8    
18.0    
18.2    
18.5    
18.7    
19.0    
19.2    
19.5    
19.7    
20.0    
20.2    
20.4    
20.7    
20.9    
21.2    
21.4    
21.7    
21.9    
22.1    
22.4    
22.6    
22.9    
23.1    
23.4    
23.6    
23.8    
24.1    
24.3    
24.6    
24.8    
25.1    
25.3    
25.5    
25.8    
26.0    
26.3    
26.5    
26.8    
27.0    
27.3    
27.5    
27.7    
28.0    
28.2    
28.5    
28.7    
29.0    
29.2    
29.4    
29.7    
29.9    
30.2    
30.4    
30.7    
30.9    
31.1    
31.4    
31.6    
31.9    
32.1    
32.4    
32.6    
32.8    
33.1    
33.3    
33.6    
33.8    
34.1    
34.3    
34.5    
34.8    
35.0    
35.3    
35.5    
35.8    
36.0    
36.3    
36.5    
36.7    
37.0    
37.2    
37.5    
37.7    
38.0    
38.2    
38.4    
38.7    
38.9    
39.2    
39.4    
39.7    
39.9    
40.1    
40.4    
40.6    
40.9    
41.1    
41.4    
41.6    
41.8    
42.1    
42.3    
42.6    
42.8    
43.1    
43.3    
43.6    
43.8    
44.0    
44.3    
44.5    
44.8    
45.0    
45.3    
45.5    
45.7    
46.0    
46.2    
46.5    
46.7    
47.0    
47.2    
47.4    
47.7    
47.9    
48.2    
48.4    
48.7    
48.9    
49.1    
49.4    
49.6    
49.9    
50.1    
50.4    
50.6    
50.9    
51.1    
51.3    
51.6    
51.8    
52.1    
52.3    
52.6    
52.8    
53.0    
53.3    
53.5    
53.8    
54.0    
54.3    
54.5    
54.7    
55.0    
55.2    
55.5    
55.7    
56.0    
56.2    
56.4    
56.7    
56.9    
57.2    
57.4    
57.7    
57.9    
58.2    
58.4    
58.6    
58.9    
59.1    
59.4    
59.6    
59.9    
60.1    
60.3    
60.6    
60.8    
61.1    
61.3    
61.6    
61.8    
62.0    
62.3    
62.5    
62.8    
63.0    
63.3    
63.5    
63.7    
64.0    
64.2    
64.5    
64.7    
65.0    
65.2    
65.5    
65.7    
65.9    
66.2    
66.4    
66.7    
66.9    
67.2    
67.4    
67.6    
67.9    
68.1    
68.4    
68.6    
68.9    
69.1    
69.3    
69.6    
69.8    
70.1    
70.3    
70.6    
70.8    
71.0    
71.3    
71.5    
71.8    
72.0    
72.3    
72.5    
72.7    
73.0    
73.2    
73.5    
73.7    
74.0    
74.2    
74.5    
74.7    
74.9    
75.2    
75.4    
75.7    
75.9    
76.2    
76.4    
76.6    
76.9    
77.1    
77.4    
77.6    
77.9    
78.1    
78.3    
78.6    
78.8    
79.1    
79.3    
79.6    
79.8    
80.0    
80.3    
80.5    
80.8    
81.0    
81.3    
81.5    
81.8    
82.0    
82.2    
82.5    
82.7    
83.0    
83.2    
83.5    
83.7    
83.9    
84.2    
84.4    
84.7    
84.9    
85.2    
85.4    
85.6    
85.9    
86.1    
86.4    
86.6    
86.9    
87.1    
87.3    
87.6    
87.8    
88.1    
88.3    
88.6    
88.8    
89.1    
89.3    
89.5    
89.8    
90.0    
90.3    
90.5    
90.8    
91.0    
91.2    
91.5    
91.7    
92.0    
92.2    
92.5    
92.7    
92.9    
93.2    
93.4    
93.7    
93.9    
94.2    
94.4    
94.6    
94.9    
95.1    
95.4    
95.6    
95.9    
96.1    
96.4    
96.6    
96.8    
97.1    
97.3    
97.6    
97.8    
98.1    
98.3    
98.5    
98.8    
99.0    
99.3    
99.5    
99.8    
-found 33 predictions from path traversal
Error with prediction: snap lend_intergenic: 27065, rend_intergenic: 24691  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 29857, rend_intergenic: 27158  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 52334, rend_intergenic: 37226  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 74418, rend_intergenic: 52503  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 82128, rend_intergenic: 75068  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 88511, rend_intergenic: 84285  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 91987, rend_intergenic: 88733  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 98251, rend_intergenic: 92554  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 100541, rend_intergenic: 98609  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 106771, rend_intergenic: 100849  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 111128, rend_intergenic: 109083  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 125422, rend_intergenic: 112550  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 131799, rend_intergenic: 128354  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 141603, rend_intergenic: 137904  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 157769, rend_intergenic: 151736  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 164789, rend_intergenic: 158326  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 173949, rend_intergenic: 173642  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 187319, rend_intergenic: 182908  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 16 predictions persist after filtering for low support