-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_12/scaffold_12_12597037-12786176

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for Augustus_model.g20012.t1
Valid prediction for GlimmerHMM_glimmerT_30208-T1
Valid prediction for Augustus_model.g20011.t1
Valid prediction for Augustus_model.g20013.t1
Valid prediction for GlimmerHMM_glimmerT_30222-T1
Valid prediction for snap_scaffold_12-snap.2332-T1
Valid prediction for GlimmerHMM_glimmerT_30224-T1
Valid prediction for Augustus_model.g20001.t1
Valid prediction for snap_scaffold_12-snap.2321-T1
Valid prediction for Augustus_model.g20005.t1
Valid prediction for GlimmerHMM_glimmerT_30226-T1
Valid prediction for Augustus_model.g20006.t1
Valid prediction for Augustus_model.g20010.t1
Valid prediction for GlimmerHMM_glimmerT_30218-T1
Valid prediction for Augustus_model.g20003.t1
Valid prediction for snap_scaffold_12-snap.2340-T1
Valid prediction for Augustus_model.g20007.t1
Valid prediction for snap_scaffold_12-snap.2339-T1
Valid prediction for HiQ_model.g20000.t1
Couldn't classify 9810, 9845
Sorry, prediction pasa_asmbl_8016.p2 fails validation.
(GGG)	 AT	9810-9845	GT	AGG
(GTG)	 AG	12243-12335	GT	AGG
(GTG)	 AG	13153-13309	GT	TGG
(AGA)	 AG	14478-14678	GT	AGG
(TCA)	 AG	16860-17020	CC	GAC
-recovered pasa_asmbl_8016.p2, terminal, 16860, 17020
-recovered pasa_asmbl_8016.p2, internal, 12243, 12335
-recovered pasa_asmbl_8016.p2, internal, 13153, 13309
-recovered pasa_asmbl_8016.p2, internal, 14478, 14678
Valid prediction for snap_scaffold_12-snap.2330-T1
Valid prediction for snap_scaffold_12-snap.2326-T1
Valid prediction for GlimmerHMM_glimmerT_30209-T1
Valid prediction for snap_scaffold_12-snap.2334-T1
Valid prediction for snap_scaffold_12-snap.2316-T1
Couldn't classify 37762, 37899
Sorry, prediction pasa_asmbl_8017.p1 fails validation.
(CAG)	 CT	37762-37899	GT	GGG
(GTG)	 AG	39160-39450	AG	AGA
-recovered pasa_asmbl_8017.p1, terminal, 39160, 39450
Valid prediction for GlimmerHMM_glimmerT_30211-T1
Valid prediction for snap_scaffold_12-snap.2325-T1
Valid prediction for GlimmerHMM_glimmerT_30213-T1
Valid prediction for snap_scaffold_12-snap.2327-T1
Valid prediction for snap_scaffold_12-snap.2342-T1
Valid prediction for GlimmerHMM_glimmerT_30217-T1
Valid prediction for snap_scaffold_12-snap.2315-T1
Valid prediction for snap_scaffold_12-snap.2328-T1
Valid prediction for GlimmerHMM_glimmerT_30219-T1
Valid prediction for GlimmerHMM_glimmerT_30207-T1
Valid prediction for snap_scaffold_12-snap.2319-T1
Valid prediction for snap_scaffold_12-snap.2336-T1
Valid prediction for snap_scaffold_12-snap.2329-T1
Valid prediction for GlimmerHMM_glimmerT_30221-T1
Valid prediction for GlimmerHMM_glimmerT_30227-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_12-snap.2335-T1
Valid prediction for GlimmerHMM_glimmerT_30225-T1
Valid prediction for GlimmerHMM_glimmerT_30223-T1
Valid prediction for GlimmerHMM_glimmerT_30228-T1
Valid prediction for GlimmerHMM_glimmerT_30216-T1
Valid prediction for snap_scaffold_12-snap.2314-T1
Valid prediction for GlimmerHMM_glimmerT_30229-T1
Valid prediction for Augustus_model.g20014.t1
Valid prediction for Augustus_model.g20004.t1
Valid prediction for Augustus_model.g20002.t1
Valid prediction for Augustus_model.g20009.t1
Valid prediction for snap_scaffold_12-snap.2341-T1
Valid prediction for snap_scaffold_12-snap.2320-T1
Valid prediction for snap_scaffold_12-snap.2318-T1
Valid prediction for snap_scaffold_12-snap.2343-T1
Valid prediction for GlimmerHMM_glimmerT_30220-T1
Valid prediction for GlimmerHMM_glimmerT_30210-T1
Valid prediction for snap_scaffold_12-snap.2324-T1
Valid prediction for snap_scaffold_12-snap.2344-T1
Valid prediction for GlimmerHMM_glimmerT_30214-T1
Valid prediction for snap_scaffold_12-snap.2333-T1
Valid prediction for snap_scaffold_12-snap.2338-T1
Valid prediction for snap_scaffold_12-snap.2337-T1
Valid prediction for GlimmerHMM_glimmerT_30215-T1
Valid prediction for snap_scaffold_12-snap.2331-T1
Valid prediction for snap_scaffold_12-snap.2323-T1
Valid prediction for GlimmerHMM_glimmerT_30212-T1
Valid prediction for snap_scaffold_12-snap.2322-T1
Valid prediction for GlimmerHMM_glimmerT_30230-T1
Valid prediction for snap_scaffold_12-snap.2317-T1
Valid prediction for Augustus_model.g20008.t1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 10082, rend_intergenic: 3993  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 25854, rend_intergenic: 18388  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 132332, rend_intergenic: 131432  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 162441, rend_intergenic: 157141  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 171183, rend_intergenic: 167740  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 189140
-exon list size: 238


building trellis

0.4    
0.8    
1.2    
1.7    
2.1    
2.5    
2.9    
3.3    
3.8    
4.2    
4.6    
5.0    
5.4    
5.8    
6.2    
6.7    
7.1    
7.5    
7.9    
8.3    
8.8    
9.2    
9.6    
10.0    
10.4    
10.8    
11.2    
11.7    
12.1    
12.5    
12.9    
13.3    
13.8    
14.2    
14.6    
15.0    
15.4    
15.8    
16.2    
16.7    
17.1    
17.5    
17.9    
18.3    
18.8    
19.2    
19.6    
20.0    
20.4    
20.8    
21.2    
21.7    
22.1    
22.5    
22.9    
23.3    
23.8    
24.2    
24.6    
25.0    
25.4    
25.8    
26.2    
26.7    
27.1    
27.5    
27.9    
28.3    
28.7    
29.2    
29.6    
30.0    
30.4    
30.8    
31.2    
31.7    
32.1    
32.5    
32.9    
33.3    
33.8    
34.2    
34.6    
35.0    
35.4    
35.8    
36.2    
36.7    
37.1    
37.5    
37.9    
38.3    
38.8    
39.2    
39.6    
40.0    
40.4    
40.8    
41.2    
41.7    
42.1    
42.5    
42.9    
43.3    
43.8    
44.2    
44.6    
45.0    
45.4    
45.8    
46.2    
46.7    
47.1    
47.5    
47.9    
48.3    
48.8    
49.2    
49.6    
50.0    
50.4    
50.8    
51.2    
51.7    
52.1    
52.5    
52.9    
53.3    
53.8    
54.2    
54.6    
55.0    
55.4    
55.8    
56.2    
56.7    
57.1    
57.5    
57.9    
58.3    
58.8    
59.2    
59.6    
60.0    
60.4    
60.8    
61.3    
61.7    
62.1    
62.5    
62.9    
63.3    
63.7    
64.2    
64.6    
65.0    
65.4    
65.8    
66.2    
66.7    
67.1    
67.5    
67.9    
68.3    
68.8    
69.2    
69.6    
70.0    
70.4    
70.8    
71.2    
71.7    
72.1    
72.5    
72.9    
73.3    
73.8    
74.2    
74.6    
75.0    
75.4    
75.8    
76.2    
76.7    
77.1    
77.5    
77.9    
78.3    
78.8    
79.2    
79.6    
80.0    
80.4    
80.8    
81.2    
81.7    
82.1    
82.5    
82.9    
83.3    
83.8    
84.2    
84.6    
85.0    
85.4    
85.8    
86.2    
86.7    
87.1    
87.5    
87.9    
88.3    
88.8    
89.2    
89.6    
90.0    
90.4    
90.8    
91.2    
91.7    
92.1    
92.5    
92.9    
93.3    
93.8    
94.2    
94.6    
95.0    
95.4    
95.8    
96.2    
96.7    
97.1    
97.5    
97.9    
98.3    
98.8    
99.2    
99.6    
-found 26 predictions from path traversal
Error with prediction: snap lend_intergenic: 10082, rend_intergenic: 3993  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 25854, rend_intergenic: 18388  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 132332, rend_intergenic: 131432  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 162441, rend_intergenic: 157141  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 171183, rend_intergenic: 167740  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 20 predictions persist after filtering for low support