-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_119

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 1742, 1935
Sorry, prediction Augustus_model.g39639.t1 fails validation.
(CCA)	 AG	1742-1935	GT	AGG
(TTG)	 AG	2476-2625	AC	AAA
-recovered Augustus_model.g39639.t1, terminal, 2476, 2625
-recovered Augustus_model.g39639.t1, internal, 1742, 1935
Couldn't classify 591, 677
Couldn't classify 10969, 11176
Sorry, prediction snap_scaffold_119-snap.1-T1 fails validation.
(GGG)	 AG	591-677	GT	AGG
(CCA)	 AG	1742-1995	GT	GGG
(GCA)	 AG	3794-3899	GT	GGG
(GCA)	 AG	4518-4623	GT	GGG
(ACG)	 AG	5154-5308	GT	ACG
(CGG)	 AG	5337-5464	GT	CGG
(GGT)	 AG	8967-9032	GT	AAG
(AAC)	 AG	10969-11176	GT	AAG
-recovered snap_scaffold_119-snap.1-T1, internal, 591, 677
-recovered snap_scaffold_119-snap.1-T1, internal, 1742, 1995
-recovered snap_scaffold_119-snap.1-T1, internal, 3794, 3899
-recovered snap_scaffold_119-snap.1-T1, internal, 4518, 4623
-recovered snap_scaffold_119-snap.1-T1, internal, 5154, 5308
-recovered snap_scaffold_119-snap.1-T1, internal, 5337, 5464
-recovered snap_scaffold_119-snap.1-T1, internal, 8967, 9032
-recovered snap_scaffold_119-snap.1-T1, internal, 10969, 11176
Valid prediction for GlimmerHMM_glimmerT_59828-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 5649, 5775
Sorry, prediction GlimmerHMM_glimmerT_59830-T1 fails validation.
(CGC)	 AG	5649-5775	GT	CCG
(GGA)	 AG	9856-10095	CG	GAC
-recovered GlimmerHMM_glimmerT_59830-T1, terminal, 9856, 10095
-recovered GlimmerHMM_glimmerT_59830-T1, internal, 5649, 5775
Valid prediction for GlimmerHMM_glimmerT_59829-T1
Couldn't classify 3352, 3589
Sorry, prediction snap_scaffold_119-snap.2-T1 fails validation.
(CAG)	 AG	3352-3589	GT	GTG
(CCT)	 AG	5446-5775	GT	CCG
(CTA)	 AG	7157-7216	AT	AGA
-recovered snap_scaffold_119-snap.2-T1, terminal, 7157, 7216
-recovered snap_scaffold_119-snap.2-T1, internal, 3352, 3589
-recovered snap_scaffold_119-snap.2-T1, internal, 5446, 5775

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 11176, rend_intergenic: 7272  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 14487
-exon list size: 29


building trellis

3.2    
6.5    
9.7    
12.9    
16.1    
19.4    
22.6    
25.8    
29.0    
32.3    
35.5    
38.7    
41.9    
45.2    
48.4    
51.6    
54.8    
58.1    
61.3    
64.5    
67.7    
71.0    
74.2    
77.4    
80.6    
83.9    
87.1    
90.3    
93.5    
96.8    
-found 3 predictions from path traversal
Error with prediction: snap lend_intergenic: 11176, rend_intergenic: 7272  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support