-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_1187

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_1187-snap.1-T1
add_exon() Sorry, snap_scaffold_1187-snap.1-T1 67-266-terminal-1 is invalid.
Couldn't classify 1002, 1143
Sorry, prediction snap_scaffold_1187-snap.2-T1 fails validation.
(ATG)	 CA	285-512	GT	CCG
(CCG)	 AG	1002-1143	GT	CAG
-recovered snap_scaffold_1187-snap.2-T1, initial, 285, 512
-recovered snap_scaffold_1187-snap.2-T1, internal, 1002, 1143
Valid prediction for GlimmerHMM_glimmerT_61017-T1
Valid prediction for Augustus_model.g40395.t1
add_exon() Sorry, Augustus_model.g40395.t1 67-266-terminal-1 is invalid.

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 3001
-exon list size: 5


building trellis

14.3    
28.6    
42.9    
57.1    
71.4    
85.7    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support