-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_1184

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 187, 349
Sorry, prediction Augustus_model.g40393.t1 fails validation.
(GGA)	 AG	187-349	GT	TGG
(GAG)	 AG	540-662	GT	TGG
(GGG)	 AG	2161-2268	TG	GAT
-recovered Augustus_model.g40393.t1, terminal, 2161, 2268
-recovered Augustus_model.g40393.t1, internal, 187, 349
-recovered Augustus_model.g40393.t1, internal, 540, 662
Couldn't classify 188, 349
Couldn't classify 1161, 1214
Sorry, prediction pasa_asmbl_7426.p1 fails validation.
(GAC)	 GG	188-349	GT	TGG
(GAG)	 AG	540-662	GT	TGG
(GTG)	 AG	1161-1214	NN	NNN
-recovered pasa_asmbl_7426.p1, internal, 540, 662
Valid prediction for GlimmerHMM_glimmerT_61014-T1
Valid prediction for GlimmerHMM_glimmerT_61015-T1
Couldn't classify 187, 349
Sorry, prediction snap_scaffold_1184-snap.1-T1 fails validation.
(GGA)	 AG	187-349	GT	TGG
(GAG)	 AG	540-662	GT	TGG
(ACC)	 AG	1168-1176	TC	GAT
-recovered snap_scaffold_1184-snap.1-T1, terminal, 1168, 1176
-recovered snap_scaffold_1184-snap.1-T1, internal, 187, 349
-recovered snap_scaffold_1184-snap.1-T1, internal, 540, 662

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 3007
-exon list size: 6


building trellis

12.5    
25.0    
37.5    
50.0    
62.5    
75.0    
87.5    
-found 2 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 2 predictions persist after filtering for low support