-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_1183

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for Augustus_model.g40392.t1
Couldn't classify 559, 637
Couldn't classify 2737, 2813
Sorry, prediction snap_scaffold_1183-snap.1-T1 fails validation.
(GTT)	 AG	559-637	GT	AAG
(AAC)	 AG	959-1041	GT	TGG
(GTG)	 AG	2043-2119	GT	CGG
(GTG)	 AG	2553-2680	GT	TTG
(AAC)	 AG	2737-2813	GT	TGG
-recovered snap_scaffold_1183-snap.1-T1, internal, 559, 637
-recovered snap_scaffold_1183-snap.1-T1, internal, 959, 1041
-recovered snap_scaffold_1183-snap.1-T1, internal, 2043, 2119
-recovered snap_scaffold_1183-snap.1-T1, internal, 2553, 2680
-recovered snap_scaffold_1183-snap.1-T1, internal, 2737, 2813
Valid prediction for GlimmerHMM_glimmerT_61013-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 3007
-exon list size: 12


building trellis

7.1    
14.3    
21.4    
28.6    
35.7    
42.9    
50.0    
57.1    
64.3    
71.4    
78.6    
85.7    
92.9    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support