-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_118

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_118-snap.6-T1
Valid prediction for GlimmerHMM_glimmerT_59826-T1
Valid prediction for snap_scaffold_118-snap.1-T1
Valid prediction for snap_scaffold_118-snap.3-T1
Valid prediction for snap_scaffold_118-snap.5-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 2543, 2662
Sorry, prediction snap_scaffold_118-snap.4-T1 fails validation.
(GTT)	 AG	2543-2662	GT	GTG
(GAA)	 AG	3054-3146	GT	TGG
(GAC)	 AG	5737-5752	CC	AAC
-recovered snap_scaffold_118-snap.4-T1, terminal, 5737, 5752
-recovered snap_scaffold_118-snap.4-T1, internal, 2543, 2662
-recovered snap_scaffold_118-snap.4-T1, internal, 3054, 3146
Valid prediction for Augustus_model.g39638.t1
Valid prediction for snap_scaffold_118-snap.2-T1
Valid prediction for GlimmerHMM_glimmerT_59827-T1
add_exon() Sorry, GlimmerHMM_glimmerT_59827-T1 2543-2696-terminal-1 is invalid.
Valid prediction for GlimmerHMM_glimmerT_59825-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 3163, rend_intergenic: 1444  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 7677, rend_intergenic: 3716  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 11994, rend_intergenic: 8888  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 14536
-exon list size: 30


building trellis

3.1    
6.2    
9.4    
12.5    
15.6    
18.8    
21.9    
25.0    
28.1    
31.2    
34.4    
37.5    
40.6    
43.8    
46.9    
50.0    
53.1    
56.2    
59.4    
62.5    
65.6    
68.8    
71.9    
75.0    
78.1    
81.2    
84.4    
87.5    
90.6    
93.8    
96.9    
-found 2 predictions from path traversal
Error with prediction: snap lend_intergenic: 3163, rend_intergenic: 1444  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 7677, rend_intergenic: 3716  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 11994, rend_intergenic: 8888  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support