-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_1178

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 763, 825
Sorry, prediction snap_scaffold_1178-snap.2-T1 fails validation.
(ACT)	 AG	763-825	GT	AGG
(CTT)	 AG	882-984	GT	TGG
(CTC)	 AG	1359-1415	GT	ATG
(TAC)	 AG	1547-1636	GT	CAG
(CTC)	 AG	2771-2980	GA	GAG
-recovered snap_scaffold_1178-snap.2-T1, terminal, 2771, 2980
-recovered snap_scaffold_1178-snap.2-T1, internal, 763, 825
-recovered snap_scaffold_1178-snap.2-T1, internal, 882, 984
-recovered snap_scaffold_1178-snap.2-T1, internal, 1359, 1415
-recovered snap_scaffold_1178-snap.2-T1, internal, 1547, 1636

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 221, 298
Couldn't classify 2406, 2481
Sorry, prediction Augustus_model.g40390.t1 fails validation.
(GAC)	 AG	221-298	GT	AGG
(ATG)	 AG	1441-1493	GT	AGG
(ACA)	 AG	1600-1723	GT	TGG
(GTG)	 AG	2093-2206	GT	AGG
(GTG)	 AG	2406-2481	GT	AGG
-recovered Augustus_model.g40390.t1, initial, 1441, 1493
-recovered Augustus_model.g40390.t1, internal, 221, 298
-recovered Augustus_model.g40390.t1, internal, 1441, 1493
-recovered Augustus_model.g40390.t1, internal, 1600, 1723
-recovered Augustus_model.g40390.t1, internal, 2093, 2206
-recovered Augustus_model.g40390.t1, internal, 2406, 2481
Couldn't classify 1396, 1493
Couldn't classify 2406, 2483
Sorry, prediction pasa_asmbl_7420.p1 fails validation.
(NNN)	 NN	1396-1493	GT	AGG
(ACA)	 AG	1600-1723	GT	TGG
(GTG)	 AG	2093-2206	GT	AGG
(GTG)	 AG	2406-2483	GA	GTG
-recovered pasa_asmbl_7420.p1, internal, 1600, 1723
-recovered pasa_asmbl_7420.p1, internal, 2093, 2206
Valid prediction for GlimmerHMM_glimmerT_61011-T1
Couldn't classify 221, 298
Couldn't classify 2406, 2481
Sorry, prediction snap_scaffold_1178-snap.1-T1 fails validation.
(GAC)	 AG	221-298	GT	AGG
(ATG)	 AG	1441-1493	GT	AGG
(ACA)	 AG	1600-1723	GT	TGG
(GTG)	 AG	2093-2206	GT	AGG
(GTG)	 AG	2406-2481	GT	AGG
-recovered snap_scaffold_1178-snap.1-T1, initial, 1441, 1493
-recovered snap_scaffold_1178-snap.1-T1, internal, 221, 298
-recovered snap_scaffold_1178-snap.1-T1, internal, 1441, 1493
-recovered snap_scaffold_1178-snap.1-T1, internal, 1600, 1723
-recovered snap_scaffold_1178-snap.1-T1, internal, 2093, 2206
-recovered snap_scaffold_1178-snap.1-T1, internal, 2406, 2481

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 2822, rend_intergenic: 763  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 3042
-exon list size: 19


building trellis

4.8    
9.5    
14.3    
19.0    
23.8    
28.6    
33.3    
38.1    
42.9    
47.6    
52.4    
57.1    
61.9    
66.7    
71.4    
76.2    
81.0    
85.7    
90.5    
95.2    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 2822, rend_intergenic: 763  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support