-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_1177

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_61010-T1
Couldn't classify 249, 560
Couldn't classify 2190, 2509
Sorry, prediction snap_scaffold_1177-snap.1-T1 fails validation.
(ACA)	 AG	249-560	GT	AGG
(GAG)	 AG	565-640	GT	TAG
(CCT)	 AG	1225-1250	GT	CGG
(GGT)	 AG	2190-2509	GT	AGG
-recovered snap_scaffold_1177-snap.1-T1, internal, 249, 560
-recovered snap_scaffold_1177-snap.1-T1, internal, 565, 640
-recovered snap_scaffold_1177-snap.1-T1, internal, 1225, 1250
-recovered snap_scaffold_1177-snap.1-T1, internal, 2190, 2509
Sorry, intron length (3) is less than minimum required (10)
Couldn't classify 2190, 2318
Sorry, prediction Augustus_model.g40389.t1 fails validation.
(ATG)	 AA	1519-1527	GT	CTG
(GGT)	 AG	2190-2318	GT	AGG
-recovered Augustus_model.g40389.t1, initial, 1519, 1527
-recovered Augustus_model.g40389.t1, internal, 2190, 2318

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 3043
-exon list size: 11


building trellis

7.7    
15.4    
23.1    
30.8    
38.5    
46.2    
53.8    
61.5    
69.2    
76.9    
84.6    
92.3    
-found 2 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 2 predictions persist after filtering for low support