-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_1163

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 208, 284
Couldn't classify 1802, 1900
Sorry, prediction snap_scaffold_1163-snap.1-T1 fails validation.
(GGT)	 AG	208-284	GT	AGG
(AAC)	 AG	771-931	GT	TGG
(CAC)	 AG	1802-1900	GT	AGG
-recovered snap_scaffold_1163-snap.1-T1, internal, 208, 284
-recovered snap_scaffold_1163-snap.1-T1, internal, 771, 931
-recovered snap_scaffold_1163-snap.1-T1, internal, 1802, 1900
Couldn't classify 208, 284
Sorry, prediction Augustus_model.g40385.t1 fails validation.
(GGT)	 AG	208-284	GT	AGG
(GGC)	 AG	1648-1667	GT	GGG
(CAC)	 AG	1802-1900	GT	AGG
(GTA)	 AG	2105-2125	TT	AGT
-recovered Augustus_model.g40385.t1, terminal, 2105, 2125
-recovered Augustus_model.g40385.t1, internal, 208, 284
-recovered Augustus_model.g40385.t1, internal, 1648, 1667
-recovered Augustus_model.g40385.t1, internal, 1802, 1900

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 3091
-exon list size: 8


building trellis

10.0    
20.0    
30.0    
40.0    
50.0    
60.0    
70.0    
80.0    
90.0    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support