-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_116

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 6331, 6486
Sorry, prediction snap_scaffold_116-snap.2-T1 fails validation.
(ATG)	 GG	1373-1555	GT	AGG
(ATC)	 AG	2775-2960	GT	AGG
(CGC)	 AG	4854-5054	GT	AGG
(AAT)	 AG	5148-5273	GT	AGG
(ACG)	 AG	6331-6486	GT	GAG
-recovered snap_scaffold_116-snap.2-T1, initial, 1373, 1555
-recovered snap_scaffold_116-snap.2-T1, internal, 2775, 2960
-recovered snap_scaffold_116-snap.2-T1, internal, 4854, 5054
-recovered snap_scaffold_116-snap.2-T1, internal, 5148, 5273
-recovered snap_scaffold_116-snap.2-T1, internal, 6331, 6486
Valid prediction for snap_scaffold_116-snap.1-T1
add_exon() Sorry, snap_scaffold_116-snap.1-T1 914-1361-terminal-1 is invalid.

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_59821-T1
Valid prediction for GlimmerHMM_glimmerT_59820-T1
Couldn't classify 7836, 7942
Couldn't classify 9735, 10007
Sorry, prediction snap_scaffold_116-snap.3-T1 fails validation.
(GTC)	 AG	7836-7942	GT	AGG
(CTG)	 AG	8588-8740	GT	CTG
(GGC)	 AG	9550-9692	GT	AAG
(CCG)	 AG	9735-10007	GT	CTG
-recovered snap_scaffold_116-snap.3-T1, internal, 7836, 7942
-recovered snap_scaffold_116-snap.3-T1, internal, 8588, 8740
-recovered snap_scaffold_116-snap.3-T1, internal, 9550, 9692
-recovered snap_scaffold_116-snap.3-T1, internal, 9735, 10007
Valid prediction for Augustus_model.g39635.t1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 6486, rend_intergenic: 4822  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 14828
-exon list size: 20


building trellis

4.5    
9.1    
13.6    
18.2    
22.7    
27.3    
31.8    
36.4    
40.9    
45.5    
50.0    
54.5    
59.1    
63.6    
68.2    
72.7    
77.3    
81.8    
86.4    
90.9    
95.5    
-found 2 predictions from path traversal
Error with prediction: snap lend_intergenic: 6486, rend_intergenic: 4822  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 2 predictions persist after filtering for low support