-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_1156

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 2737, 2844
Sorry, prediction GlimmerHMM_glimmerT_61004-T1 fails validation.
(ATG)	 AG	1916-1946	GT	TGG
(CAG)	 AG	2410-2573	GT	AGG
(GCC)	 AG	2737-2844	GT	AGG
-recovered GlimmerHMM_glimmerT_61004-T1, initial, 1916, 1946
-recovered GlimmerHMM_glimmerT_61004-T1, internal, 1916, 1946
-recovered GlimmerHMM_glimmerT_61004-T1, internal, 2410, 2573
-recovered GlimmerHMM_glimmerT_61004-T1, internal, 2737, 2844
Couldn't classify 1726, 1946
Couldn't classify 2737, 2844
Sorry, prediction snap_scaffold_1156-snap.2-T1 fails validation.
(TGT)	 AG	1726-1946	GT	TGG
(CAG)	 AG	2410-2573	GT	AGG
(GCC)	 AG	2737-2844	GT	AGG
-recovered snap_scaffold_1156-snap.2-T1, internal, 1726, 1946
-recovered snap_scaffold_1156-snap.2-T1, internal, 2410, 2573
-recovered snap_scaffold_1156-snap.2-T1, internal, 2737, 2844
Couldn't classify 113, 130
Couldn't classify 2737, 2844
Sorry, prediction Augustus_model.g40382.t1 fails validation.
(ATC)	 AG	113-130	GT	AGG
(TGT)	 AG	1726-1946	GT	TGG
(CAG)	 AG	2410-2573	GT	AGG
(GCC)	 AG	2737-2844	GT	AGG
-recovered Augustus_model.g40382.t1, internal, 113, 130
-recovered Augustus_model.g40382.t1, internal, 1726, 1946
-recovered Augustus_model.g40382.t1, internal, 2410, 2573
-recovered Augustus_model.g40382.t1, internal, 2737, 2844

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 301, 403
Sorry, prediction snap_scaffold_1156-snap.1-T1 fails validation.
(CTC)	 AG	301-403	GT	GGG
(TCT)	 AG	671-826	GT	GAG
(GAG)	 AG	1158-1336	GT	AGG
(GGG)	 AG	2130-2600	TA	GAT
-recovered snap_scaffold_1156-snap.1-T1, terminal, 2130, 2600
-recovered snap_scaffold_1156-snap.1-T1, internal, 301, 403
-recovered snap_scaffold_1156-snap.1-T1, internal, 671, 826
-recovered snap_scaffold_1156-snap.1-T1, internal, 1158, 1336

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 2817, rend_intergenic: 1726  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 3117
-exon list size: 16


building trellis

5.6    
11.1    
16.7    
22.2    
27.8    
33.3    
38.9    
44.4    
50.0    
55.6    
61.1    
66.7    
72.2    
77.8    
83.3    
88.9    
94.4    
-found 2 predictions from path traversal
Error with prediction: snap lend_intergenic: 2817, rend_intergenic: 1726  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support