-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_1150

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 2565, 2756
Sorry, prediction GlimmerHMM_glimmerT_60999-T1 fails validation.
(ATG)	 CC	1188-1259	GT	CAG
(AGC)	 AG	2565-2756	GT	GGG
-recovered GlimmerHMM_glimmerT_60999-T1, initial, 1188, 1259
-recovered GlimmerHMM_glimmerT_60999-T1, internal, 2565, 2756
Valid prediction for Augustus_model.g40379.t1
add_exon() Sorry, Augustus_model.g40379.t1 165-226-terminal-1 is invalid.
Couldn't classify 165, 222
Couldn't classify 2960, 3063
Sorry, prediction snap_scaffold_1150-snap.1-T1 fails validation.
(GCC)	 AG	165-222	GT	ATG
(GAG)	 AG	1121-1259	GT	CAG
(AGC)	 AG	2565-2756	GT	GGG
(AAC)	 AG	2832-2901	GT	AGG
(CTC)	 AG	2960-3063	GT	TCG
-recovered snap_scaffold_1150-snap.1-T1, internal, 165, 222
-recovered snap_scaffold_1150-snap.1-T1, internal, 1121, 1259
-recovered snap_scaffold_1150-snap.1-T1, internal, 2565, 2756
-recovered snap_scaffold_1150-snap.1-T1, internal, 2832, 2901
-recovered snap_scaffold_1150-snap.1-T1, internal, 2960, 3063

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 3123
-exon list size: 9


building trellis

9.1    
18.2    
27.3    
36.4    
45.5    
54.5    
63.6    
72.7    
81.8    
90.9    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support