-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_1147

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 46, 214
Sorry, prediction Augustus_model.g40377.t1 fails validation.
(TTT)	 AG	46-214	GT	CAG
(ATG)	 AG	429-629	GT	AGG
(TGC)	 AG	782-864	AA	AGA
add_exon() Sorry, Augustus_model.g40377.t1 429-629-initial-1 is invalid.
-recovered Augustus_model.g40377.t1, initial, 429, 629
-recovered Augustus_model.g40377.t1, terminal, 782, 864
-recovered Augustus_model.g40377.t1, internal, 46, 214
-recovered Augustus_model.g40377.t1, internal, 429, 629
Couldn't classify 46, 214
Sorry, prediction snap_scaffold_1147-snap.1-T1 fails validation.
(TTT)	 AG	46-214	GT	CAG
(ATG)	 AG	429-629	GT	AGG
(GGC)	 AG	721-798	GT	CAG
(AAT)	 AG	2991-3124	CT	AGC
add_exon() Sorry, snap_scaffold_1147-snap.1-T1 429-629-initial-1 is invalid.
-recovered snap_scaffold_1147-snap.1-T1, initial, 429, 629
-recovered snap_scaffold_1147-snap.1-T1, terminal, 2991, 3124
-recovered snap_scaffold_1147-snap.1-T1, internal, 46, 214
-recovered snap_scaffold_1147-snap.1-T1, internal, 429, 629
-recovered snap_scaffold_1147-snap.1-T1, internal, 721, 798
Couldn't classify 429, 629
Sorry, prediction GlimmerHMM_glimmerT_60998-T1 fails validation.
(ATG)	 TG	133-214	GT	CAG
(ATG)	 AG	429-629	GT	AGG
-recovered GlimmerHMM_glimmerT_60998-T1, initial, 133, 214
add_exon() Sorry, GlimmerHMM_glimmerT_60998-T1 429-629-initial-1 is invalid.
-recovered GlimmerHMM_glimmerT_60998-T1, initial, 429, 629
-recovered GlimmerHMM_glimmerT_60998-T1, internal, 429, 629
Couldn't classify 46, 214
Couldn't classify 429, 619
Sorry, prediction pasa_asmbl_7412.p1 fails validation.
(TTT)	 AG	46-214	GT	CAG
(ATG)	 AG	429-619	AC	GCA
-recovered pasa_asmbl_7412.p1, internal, 46, 214

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 3134
-exon list size: 7


building trellis

11.1    
22.2    
33.3    
44.4    
55.6    
66.7    
77.8    
88.9    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support