-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_1145

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_60997-T1
add_exon() Sorry, GlimmerHMM_glimmerT_60997-T1 2397-2574-terminal-1 is invalid.
Couldn't classify 595, 696
Couldn't classify 2397, 2518
Sorry, prediction snap_scaffold_1145-snap.1-T1 fails validation.
(GGT)	 AG	595-696	GT	AAG
(AGC)	 AG	2397-2518	GT	AGG
-recovered snap_scaffold_1145-snap.1-T1, internal, 595, 696
-recovered snap_scaffold_1145-snap.1-T1, internal, 2397, 2518

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 614, 729
Couldn't classify 2428, 2484
Sorry, prediction snap_scaffold_1145-snap.2-T1 fails validation.
(AGA)	 AG	614-729	GT	GGG
(CGT)	 AG	2084-2286	GT	AGG
(TAT)	 AG	2428-2484	GT	AGG
-recovered snap_scaffold_1145-snap.2-T1, internal, 614, 729
-recovered snap_scaffold_1145-snap.2-T1, internal, 2084, 2286
-recovered snap_scaffold_1145-snap.2-T1, internal, 2428, 2484

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 2518, rend_intergenic: 665  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 3148
-exon list size: 8


building trellis

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-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 2518, rend_intergenic: 665  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support