-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_114

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for Augustus_model.g39631.t1
Valid prediction for GlimmerHMM_glimmerT_59817-T1
Valid prediction for CodingQuarry_transcript_8384-T1
Valid prediction for GlimmerHMM_glimmerT_59813-T1
Couldn't classify 2829, 3013
Sorry, prediction pasa_asmbl_7405.p1 fails validation.
(ATG)	 AT	1664-1784	GT	AGG
(GCG)	 AG	2143-2244	GT	CTG
(ATC)	 AG	2829-3013	AG	CCA
-recovered pasa_asmbl_7405.p1, initial, 1664, 1784
-recovered pasa_asmbl_7405.p1, internal, 2143, 2244
Valid prediction for pasa_asmbl_7408.p2
Valid prediction for snap_scaffold_114-snap.3-T1
Valid prediction for GlimmerHMM_glimmerT_59816-T1
Valid prediction for snap_scaffold_114-snap.2-T1
Valid prediction for snap_scaffold_114-snap.1-T1
Valid prediction for GlimmerHMM_glimmerT_59815-T1
Valid prediction for CodingQuarry_transcript_8383-T1
Valid prediction for GlimmerHMM_glimmerT_59814-T1
Valid prediction for snap_scaffold_114-snap.5-T1
Valid prediction for HiQ_model.g39632.t1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_114-snap.4-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 14875
-exon list size: 35


building trellis

2.7    
5.4    
8.1    
10.8    
13.5    
16.2    
18.9    
21.6    
24.3    
27.0    
29.7    
32.4    
35.1    
37.8    
40.5    
43.2    
45.9    
48.6    
51.4    
54.1    
56.8    
59.5    
62.2    
64.9    
67.6    
70.3    
73.0    
75.7    
78.4    
81.1    
83.8    
86.5    
89.2    
91.9    
94.6    
97.3    
-found 5 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 5 predictions persist after filtering for low support