-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_1133 -reading genomic sequence. ** Processing features (+) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: +) -loading gene prediction evidence. (strand: +)Couldn't classify 635, 841 Couldn't classify 2848, 2957 Sorry, prediction snap_scaffold_1133-snap.1-T1 fails validation. (CTG) AG 635-841 GT CGG (TCT) AG 1347-1529 GT TGG (CAA) AG 1736-1924 GT AGG (CAC) AG 2230-2347 GT GGG (AGA) AG 2598-2653 GT AGG (GAA) AG 2848-2957 GT GAG -recovered snap_scaffold_1133-snap.1-T1, internal, 635, 841 -recovered snap_scaffold_1133-snap.1-T1, internal, 1347, 1529 -recovered snap_scaffold_1133-snap.1-T1, internal, 1736, 1924 -recovered snap_scaffold_1133-snap.1-T1, internal, 2230, 2347 -recovered snap_scaffold_1133-snap.1-T1, internal, 2598, 2653 -recovered snap_scaffold_1133-snap.1-T1, internal, 2848, 2957 Couldn't classify 2848, 2957 Sorry, prediction GlimmerHMM_glimmerT_60989-T1 fails validation. (ATG) AG 1392-1529 GT TGG (CAA) AG 1736-1924 GT AGG (CAC) AG 2230-2347 GT GGG (AGA) AG 2598-2653 GT AGG (GAA) AG 2848-2957 GT GAG -recovered GlimmerHMM_glimmerT_60989-T1, initial, 1392, 1529 -recovered GlimmerHMM_glimmerT_60989-T1, internal, 1392, 1529 -recovered GlimmerHMM_glimmerT_60989-T1, internal, 1736, 1924 -recovered GlimmerHMM_glimmerT_60989-T1, internal, 2230, 2347 -recovered GlimmerHMM_glimmerT_60989-T1, internal, 2598, 2653 -recovered GlimmerHMM_glimmerT_60989-T1, internal, 2848, 2957 Valid prediction for GlimmerHMM_glimmerT_60988-T1 Couldn't classify 635, 841 Couldn't classify 2848, 2955 Sorry, prediction pasa_asmbl_7403.p1 fails validation. (CTG) AG 635-841 GT CGG (TCT) AG 1347-1490 GT AGG (CAA) AG 1736-1924 GT AGG (CAC) AG 2230-2347 GT GGG (AGA) AG 2598-2653 GT AGG (GAA) AG 2848-2955 GA AGG -recovered pasa_asmbl_7403.p1, internal, 635, 841 -recovered pasa_asmbl_7403.p1, internal, 1347, 1490 -recovered pasa_asmbl_7403.p1, internal, 1736, 1924 -recovered pasa_asmbl_7403.p1, internal, 2230, 2347 -recovered pasa_asmbl_7403.p1, internal, 2598, 2653 Couldn't classify 635, 841 Sorry, prediction Augustus_model.g40371.t1 fails validation. (CTG) AG 635-841 GT CGG (TCT) AG 1347-1490 GT AGG (CAA) AG 1736-1924 GT AGG (CAC) AG 2230-2347 GT GGG (AGA) AG 2598-2653 GT AGG (GAA) AG 2848-2961 GA AAG -recovered Augustus_model.g40371.t1, terminal, 2848, 2961 -recovered Augustus_model.g40371.t1, internal, 635, 841 -recovered Augustus_model.g40371.t1, internal, 1347, 1490 -recovered Augustus_model.g40371.t1, internal, 1736, 1924 -recovered Augustus_model.g40371.t1, internal, 2230, 2347 -recovered Augustus_model.g40371.t1, internal, 2598, 2653 -loading the search evidence (protein and EST search results, strand: +) -scoring exons (strand: +) ** Processing features (-) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: -) -loading gene prediction evidence. (strand: -) -loading the search evidence (protein and EST search results, strand: -) -scoring exons (strand: -) -building DP trellis -building trellis in range 1 - 3186 -exon list size: 17 building trellis 5.3 10.5 15.8 21.1 26.3 31.6 36.8 42.1 47.4 52.6 57.9 63.2 68.4 73.7 78.9 84.2 89.5 94.7 -found 1 predictions from path traversal GOT 5prime partial gene. -reporting highest scoring path thru the trellis. -found 1 predictions persist after filtering for low support