-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_113

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_59811-T1
add_exon() Sorry, GlimmerHMM_glimmerT_59811-T1 3701-3993-terminal-1 is invalid.
Valid prediction for snap_scaffold_113-snap.2-T1
Valid prediction for GlimmerHMM_glimmerT_59812-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 6090, 6342
Couldn't classify 11043, 11157
Sorry, prediction snap_scaffold_113-snap.1-T1 fails validation.
(TTT)	 AG	6090-6342	GT	AGG
(ACG)	 AG	11043-11157	GT	GGG
-recovered snap_scaffold_113-snap.1-T1, internal, 6090, 6342
-recovered snap_scaffold_113-snap.1-T1, internal, 11043, 11157

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 8824, rend_intergenic: 4602  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 14913
-exon list size: 7


building trellis

11.1    
22.2    
33.3    
44.4    
55.6    
66.7    
77.8    
88.9    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 8824, rend_intergenic: 4602  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support