-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_1121

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 362, 528
Sorry, prediction snap_scaffold_1121-snap.1-T1 fails validation.
(ACT)	 AG	362-528	GT	AGG
(ACA)	 AG	758-946	GT	CTG
(TCC)	 AG	2041-2097	CA	AAC
-recovered snap_scaffold_1121-snap.1-T1, terminal, 2041, 2097
-recovered snap_scaffold_1121-snap.1-T1, internal, 362, 528
-recovered snap_scaffold_1121-snap.1-T1, internal, 758, 946
Couldn't classify 362, 528
Sorry, prediction Augustus_model.g40365.t1 fails validation.
(ACT)	 AG	362-528	GT	AGG
(ACA)	 AG	758-1010	GT	CTG
(TTT)	 AG	1882-1937	AT	AGA
-recovered Augustus_model.g40365.t1, terminal, 1882, 1937
-recovered Augustus_model.g40365.t1, internal, 362, 528
-recovered Augustus_model.g40365.t1, internal, 758, 1010
Couldn't classify 758, 946
Sorry, prediction GlimmerHMM_glimmerT_60979-T1 fails validation.
(ATG)	 GC	388-528	GT	AGG
(ACA)	 AG	758-946	GT	CTG
-recovered GlimmerHMM_glimmerT_60979-T1, initial, 388, 528
-recovered GlimmerHMM_glimmerT_60979-T1, internal, 758, 946

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_1121-snap.2-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 2097, rend_intergenic: 669  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 3227
-exon list size: 10


building trellis

8.3    
16.7    
25.0    
33.3    
41.7    
50.0    
58.3    
66.7    
75.0    
83.3    
91.7    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 2097, rend_intergenic: 669  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support