-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_1114

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 700, 1128
Couldn't classify 1602, 1688
Sorry, prediction snap_scaffold_1114-snap.1-T1 fails validation.
(AGC)	 AG	700-1128	GT	AAG
(CTC)	 AG	1602-1688	GT	AGG
-recovered snap_scaffold_1114-snap.1-T1, internal, 700, 1128
-recovered snap_scaffold_1114-snap.1-T1, internal, 1602, 1688
Valid prediction for GlimmerHMM_glimmerT_60974-T1
add_exon() Sorry, GlimmerHMM_glimmerT_60974-T1 1323-1546-terminal-1 is invalid.

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 3247
-exon list size: 3


building trellis

20.0    
40.0    
60.0    
80.0    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support