-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_1113

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 2613, 3248
Sorry, prediction GlimmerHMM_glimmerT_60973-T1 fails validation.
(ATG)	 CC	2613-3248		CC
Valid prediction for snap_scaffold_1113-snap.1-T1
Valid prediction for Augustus_model.g40360.t1
Valid prediction for GlimmerHMM_glimmerT_60972-T1
add_exon() Sorry, GlimmerHMM_glimmerT_60972-T1 2175-2587-terminal-1 is invalid.
Couldn't classify 2613, 3248
Sorry, prediction Augustus_model.g40361.t1 fails validation.
(ATG)	 CC	2613-3248		CC
Valid prediction for snap_scaffold_1113-snap.2-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 3248
-exon list size: 4


building trellis

16.7    
33.3    
50.0    
66.7    
83.3    
-found 2 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 2 predictions persist after filtering for low support