-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_1112

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 420, 590
Sorry, prediction GlimmerHMM_glimmerT_60971-T1 fails validation.
(CAG)	 AG	420-590	GT	TGG
(ACT)	 AG	1886-2110	GT	AGG
(GTC)	 AG	2386-2678	AG	GAA
-recovered GlimmerHMM_glimmerT_60971-T1, terminal, 2386, 2678
-recovered GlimmerHMM_glimmerT_60971-T1, internal, 420, 590
-recovered GlimmerHMM_glimmerT_60971-T1, internal, 1886, 2110
Couldn't classify 420, 590
Couldn't classify 2386, 2641
Sorry, prediction snap_scaffold_1112-snap.1-T1 fails validation.
(CAG)	 AG	420-590	GT	TGG
(ACT)	 AG	1886-2110	GT	AGG
(GTC)	 AG	2386-2641	GT	CAG
-recovered snap_scaffold_1112-snap.1-T1, internal, 420, 590
-recovered snap_scaffold_1112-snap.1-T1, internal, 1886, 2110
-recovered snap_scaffold_1112-snap.1-T1, internal, 2386, 2641
Couldn't classify 423, 590
Sorry, prediction Augustus_model.g40359.t1 fails validation.
(CAG)	 AG	423-590	GT	TGG
(ACT)	 AG	1886-2110	GT	AGG
(GTC)	 AG	2386-2678	AG	GAA
-recovered Augustus_model.g40359.t1, terminal, 2386, 2678
-recovered Augustus_model.g40359.t1, internal, 423, 590
-recovered Augustus_model.g40359.t1, internal, 1886, 2110

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 3251
-exon list size: 7


building trellis

11.1    
22.2    
33.3    
44.4    
55.6    
66.7    
77.8    
88.9    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support