-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_1111

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_1111-snap.2-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 1330, 1498
Sorry, prediction GlimmerHMM_glimmerT_60970-T1 fails validation.
(AAC)	 AG	1330-1498	GT	GGG
(GCC)	 AG	1851-1939	TC	AGT
-recovered GlimmerHMM_glimmerT_60970-T1, terminal, 1851, 1939
-recovered GlimmerHMM_glimmerT_60970-T1, internal, 1330, 1498
Couldn't classify 1330, 1498
Couldn't classify 2845, 2875
Sorry, prediction Augustus_model.g40358.t1 fails validation.
(AAC)	 AG	1330-1498	GT	GGG
(GCC)	 AG	1851-1934	GT	AGG
(GGT)	 AG	2680-2705	GT	GTG
(CCT)	 AG	2845-2875	GT	AGG
-recovered Augustus_model.g40358.t1, internal, 1330, 1498
-recovered Augustus_model.g40358.t1, internal, 1851, 1934
-recovered Augustus_model.g40358.t1, internal, 2680, 2705
-recovered Augustus_model.g40358.t1, internal, 2845, 2875
Couldn't classify 1330, 1498
Couldn't classify 2680, 2801
Sorry, prediction snap_scaffold_1111-snap.1-T1 fails validation.
(AAC)	 AG	1330-1498	GT	GGG
(GCC)	 AG	1851-1934	GT	AGG
(GGT)	 AG	2680-2801	GT	CGG
-recovered snap_scaffold_1111-snap.1-T1, internal, 1330, 1498
-recovered snap_scaffold_1111-snap.1-T1, internal, 1851, 1934
-recovered snap_scaffold_1111-snap.1-T1, internal, 2680, 2801

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 3257
-exon list size: 13


building trellis

6.7    
13.3    
20.0    
26.7    
33.3    
40.0    
46.7    
53.3    
60.0    
66.7    
73.3    
80.0    
86.7    
93.3    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support