-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_111

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for HiQ_model.g39628.t1
Valid prediction for pasa_asmbl_7392.p1
Valid prediction for snap_scaffold_111-snap.1-T1
Valid prediction for GlimmerHMM_glimmerT_59808-T1
Valid prediction for CodingQuarry_transcript_8374-T1
Valid prediction for Augustus_model.g39627.t1
Valid prediction for GlimmerHMM_glimmerT_59806-T1
Valid prediction for snap_scaffold_111-snap.2-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_111-snap.3-T1
Valid prediction for GlimmerHMM_glimmerT_59807-T1
Valid prediction for GlimmerHMM_glimmerT_59809-T1
Valid prediction for CodingQuarry_transcript_8375-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 12562, rend_intergenic: 8457  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 15000
-exon list size: 33


building trellis

2.9    
5.7    
8.6    
11.4    
14.3    
17.1    
20.0    
22.9    
25.7    
28.6    
31.4    
34.3    
37.1    
40.0    
42.9    
45.7    
48.6    
51.4    
54.3    
57.1    
60.0    
62.9    
65.7    
68.6    
71.4    
74.3    
77.1    
80.0    
82.9    
85.7    
88.6    
91.4    
94.3    
97.1    
-found 4 predictions from path traversal
Error with prediction: snap lend_intergenic: 12562, rend_intergenic: 8457  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 3 predictions persist after filtering for low support