-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_1102

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 3136, 3261
Sorry, prediction Augustus_model.g40353.t1 fails validation.
(ATG)	 CC	52-124	GT	CGG
(GAT)	 AG	3136-3261	GT	CAG
-recovered Augustus_model.g40353.t1, initial, 52, 124
-recovered Augustus_model.g40353.t1, internal, 3136, 3261
Couldn't classify 26, 124
Couldn't classify 3136, 3254
Sorry, prediction snap_scaffold_1102-snap.1-T1 fails validation.
(GTC)	 AG	26-124	GT	CGG
(GAT)	 AG	3136-3254	GT	TAG
-recovered snap_scaffold_1102-snap.1-T1, internal, 26, 124
-recovered snap_scaffold_1102-snap.1-T1, internal, 3136, 3254

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 3290
-exon list size: 4


building trellis

16.7    
33.3    
50.0    
66.7    
83.3    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support