-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_1101

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 79, 271
Couldn't classify 3016, 3171
Sorry, prediction snap_scaffold_1101-snap.1-T1 fails validation.
(AGA)	 AG	79-271	GT	AGG
(ACT)	 AG	490-681	GT	AGG
(AAC)	 AG	755-1270	GT	GGG
(CTG)	 AG	3016-3171	GT	GGG
-recovered snap_scaffold_1101-snap.1-T1, internal, 79, 271
-recovered snap_scaffold_1101-snap.1-T1, internal, 490, 681
-recovered snap_scaffold_1101-snap.1-T1, internal, 755, 1270
-recovered snap_scaffold_1101-snap.1-T1, internal, 3016, 3171
Valid prediction for GlimmerHMM_glimmerT_60965-T1
Couldn't classify 79, 271
Sorry, prediction Augustus_model.g40352.t1 fails validation.
(AGA)	 AG	79-271	GT	AGG
(ACT)	 AG	490-681	GT	AGG
(AAC)	 AG	755-895	GT	CAG
(GAG)	 AG	1912-2018	TA	AGT
-recovered Augustus_model.g40352.t1, terminal, 1912, 2018
-recovered Augustus_model.g40352.t1, internal, 79, 271
-recovered Augustus_model.g40352.t1, internal, 490, 681
-recovered Augustus_model.g40352.t1, internal, 755, 895

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 1377, 1677
Couldn't classify 2626, 2813
Sorry, prediction snap_scaffold_1101-snap.2-T1 fails validation.
(CTC)	 AG	1377-1677	GT	GGG
(GGG)	 AG	2626-2813	GT	ATG
-recovered snap_scaffold_1101-snap.2-T1, internal, 1377, 1677
-recovered snap_scaffold_1101-snap.2-T1, internal, 2626, 2813

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 3171, rend_intergenic: 480  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 3292
-exon list size: 12


building trellis

7.1    
14.3    
21.4    
28.6    
35.7    
42.9    
50.0    
57.1    
64.3    
71.4    
78.6    
85.7    
92.9    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 3171, rend_intergenic: 480  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support