-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_1100

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 2132, 2183
Sorry, prediction snap_scaffold_1100-snap.1-T1 fails validation.
(ATG)	 TA	328-418	GT	TAG
(ATA)	 AG	540-747	GT	AGG
(GCA)	 AG	2132-2183	GT	CGG
-recovered snap_scaffold_1100-snap.1-T1, initial, 328, 418
-recovered snap_scaffold_1100-snap.1-T1, internal, 540, 747
-recovered snap_scaffold_1100-snap.1-T1, internal, 2132, 2183

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 253, 292
Sorry, prediction Augustus_model.g40351.t1 fails validation.
(GAC)	 AG	253-292	GT	AGG
(ACC)	 AG	1266-1320	GT	AGG
(GTG)	 AG	1677-1817	GT	AAG
(GAC)	 AG	2500-2577	GT	AGG
(TTT)	 AG	2748-2955	GA	AGG
-recovered Augustus_model.g40351.t1, terminal, 2748, 2955
-recovered Augustus_model.g40351.t1, internal, 253, 292
-recovered Augustus_model.g40351.t1, internal, 1266, 1320
-recovered Augustus_model.g40351.t1, internal, 1677, 1817
-recovered Augustus_model.g40351.t1, internal, 2500, 2577
Couldn't classify 1677, 1817
Sorry, prediction snap_scaffold_1100-snap.2-T1 fails validation.
(GTG)	 AG	1677-1817	GT	AAG
(GAC)	 AG	2500-2577	GT	AGG
(TTT)	 AG	2748-2955	GA	AGG
-recovered snap_scaffold_1100-snap.2-T1, terminal, 2748, 2955
-recovered snap_scaffold_1100-snap.2-T1, internal, 1677, 1817
-recovered snap_scaffold_1100-snap.2-T1, internal, 2500, 2577
Couldn't classify 1677, 1817
Sorry, prediction GlimmerHMM_glimmerT_60964-T1 fails validation.
(GTG)	 AG	1677-1817	GT	AAG
(GAC)	 AG	2500-2577	GT	AGG
(GTG)	 AG	2772-2955	GA	AGG
-recovered GlimmerHMM_glimmerT_60964-T1, terminal, 2772, 2955
-recovered GlimmerHMM_glimmerT_60964-T1, internal, 1677, 1817
-recovered GlimmerHMM_glimmerT_60964-T1, internal, 2500, 2577

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 2183, rend_intergenic: 343  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 3297
-exon list size: 13


building trellis

6.7    
13.3    
20.0    
26.7    
33.3    
40.0    
46.7    
53.3    
60.0    
66.7    
73.3    
80.0    
86.7    
93.3    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 2183, rend_intergenic: 343  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support